BO28193.complete Sequence
1870 bp assembled on 2011-07-18
GenBank Submission: KX794136
> BO28193.complete
GAAGTTATCAGTCGACATGGCTGAGAATGAACCGCTGAACGACCTGCAGA
GCCAGGTGAATGGTCGTATCCTGCCCGCCGCCAATGGACATACAGCATCC
GCGACCAACGGATTGGTGCATGCGAATGGCAAGGATGCAATGAAGCCGTC
AGCTCCCGTTCAGAATGGGAATGGCAACGCGAACGGGACACACATCGAGG
CGCCCTGCTGTCGGGACATACACGGCAAGGAGCCACCGGACGGAGGAGCA
CGCGCCTGGCTGGTCATGGTGAGCGCCTTCCTTTGCAACGGCATCATCTT
TGGGTTCATCAACACCTACGGCGTTATCCATTCGCTGCTGACGGATAGGC
TTACGAAGCTCGGCGATCCGGAGGCGTCCAGCAAAGCGGCTCTGATTGGC
GCCCTGGCCATCGGCACCACATTCCTCTTCTCCACAATGGCTGGCTGTCT
GACGGACAAGATTGGCCTGCGGCTGACCACGTTCGCCGGCGGAGTCCTCT
CCGCGGGAGGACTGCTGCTGTCCTCGTTTTGCACGGAGAACATCGGCGCC
CTGTACTTCACCTACGGGATCATGTTCGGCCTGGGTGCCGCCCTTGCCTA
CACGCCCACATTGGCCATCCTGGGCCACTATTTCAAGCGGTACCTGGGAA
AGGTGAGTGGCTTTGTGACCGCCGGCTCCAGCGTTTTCACTGTGATACTG
CCGCCCTGTCTGGACAAGCTGCTCGGTAGCTATGGTCTGGAGGGGACCCT
GCGGATAATGAGCCTCGTTTCCGCCTTTATTATCCTTTGCTCCTTCGTGT
ACAAGCCACTGCATCCGCCACCGGAGCCGCCGAAGAAGAAGCCCGGCAGA
TCGCGCATCAATCTCTTCCTACGCTCGATCATCAACGTGGAGATCTGGAA
GCGTAAACGCTTCGTCATCTGGGCACTTTGTGTGCCGCTCGCCTTGTTCG
GCTACTTTGTGCCCTATGTGCACATGATGCAGTTCGTGAAAACCACTTTT
CCGGGAGAGGATGTCAACCTGCCGGTCATGTGTATCGGCATCACCTCCGG
CATCGGGCGTCTGATTTTCGGAGTCATTGCCGATATGCCGGGTGTGAACC
GTATGTACCTGCAACAATTGTCCTTGGTGTCCATTGGCCTGGTTACCTTG
CTGCTGCCGCTCACCAACTCGTACGTCATCCTCGTCTCGTTCACCCTGGT
CATGGGTCTTTTCGACGGCTGCTTCATTTCGCTGCTGGGCCCAATAGCCT
ACGAGATCTGTGGCCCCTCGGGCGCCACACAGGCCATCGGCTTTCTGCTA
GGACTCAGTTCTATTCCGCTCACAGTGGGTCCACCAGTGGCGGGCATGAT
CTTCGACAGCACGAACTCCTACACATTGCCGCTGATCCTCGCCGGACTCC
CCCCACTACTTGGCTCCTCGCTCTTGTTCCTCATCAAGTGCGTCAAGGAG
GAGGAGAACGGGGTCAGTGCGCCGCGAGCGGTGGTACTGGCCAATGGAGA
CATCGAGATTGCCGGCAACGGCCATTATCGGTCGGCTGGCACCAAGTCCA
GTGCACCGCTGATGGGTGCCACGAATGGTATCAATGGAAGCGCACCAGCG
TCCCCAACTATCCAGAGCAATGGACACGTGGACAACGGAACTGGTTCGTA
CCCCGACTCACCTTGGCCTAGCCCCACTCGCATCTCAGACTCCGCCGCCT
GCGACCATTCCAGTAGCTCGCTTCACACTAACCCGGGCACCCTGCTGCCC
AGCTGCTCGCACACCGCCCTGCTGAGCGGGCGCTCTGGCTCCAGCAAGTC
CCTGCCCCTGGGCGACGAACCCAAGAGGCGTCGCTATAACTACTCCATCT
ACGCAAGCTTTCTAGACCAT
BO28193.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:39:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kar-RB | 1839 | CG12286-PB | 1..1836 | 17..1852 | 9180 | 100 | Plus |
| kar-RA | 1662 | CG12286-PA | 1..1628 | 17..1644 | 8140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kar-RB | 2321 | CG12286-RB | 192..2028 | 16..1852 | 9185 | 100 | Plus |
| kar-RA | 2176 | CG12286-RA | 192..1820 | 16..1644 | 8145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12683314..12684099 | 1539..754 | 3930 | 100 | Minus |
| 3R | 32079331 | 3R | 12687716..12688089 | 389..16 | 1870 | 100 | Minus |
| 3R | 32079331 | 3R | 12684154..12684523 | 758..389 | 1835 | 99.7 | Minus |
| 3R | 32079331 | 3R | 12682928..12683242 | 1852..1538 | 1575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:39:35 has no hits.
BO28193.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-18 15:33:47 Download gff for
BO28193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kar-RB | 193..2028 | 17..1854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:50 Download gff for
BO28193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kar-RB | 193..2028 | 17..1854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:53 Download gff for
BO28193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kar-RB | 193..2028 | 17..1854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:53 Download gff for
BO28193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12684158..12684522 | 390..754 | 100 | <- | Minus |
| 3R | 12682926..12683241 | 1539..1854 | 99 | <- | Minus |
| 3R | 12683315..12684098 | 755..1538 | 100 | <- | Minus |
| 3R | 12687716..12688088 | 17..389 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:50 Download gff for
BO28193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8508648..8508963 | 1539..1854 | 99 | <- | Minus |
| arm_3R | 8509037..8509820 | 755..1538 | 100 | <- | Minus |
| arm_3R | 8509880..8510244 | 390..754 | 100 | <- | Minus |
| arm_3R | 8513438..8513810 | 17..389 | 100 | | Minus |
BO28193.pep Sequence
Translation from 16 to 1870
> BO28193.pep
MAENEPLNDLQSQVNGRILPAANGHTASATNGLVHANGKDAMKPSAPVQN
GNGNANGTHIEAPCCRDIHGKEPPDGGARAWLVMVSAFLCNGIIFGFINT
YGVIHSLLTDRLTKLGDPEASSKAALIGALAIGTTFLFSTMAGCLTDKIG
LRLTTFAGGVLSAGGLLLSSFCTENIGALYFTYGIMFGLGAALAYTPTLA
ILGHYFKRYLGKVSGFVTAGSSVFTVILPPCLDKLLGSYGLEGTLRIMSL
VSAFIILCSFVYKPLHPPPEPPKKKPGRSRINLFLRSIINVEIWKRKRFV
IWALCVPLALFGYFVPYVHMMQFVKTTFPGEDVNLPVMCIGITSGIGRLI
FGVIADMPGVNRMYLQQLSLVSIGLVTLLLPLTNSYVILVSFTLVMGLFD
GCFISLLGPIAYEICGPSGATQAIGFLLGLSSIPLTVGPPVAGMIFDSTN
SYTLPLILAGLPPLLGSSLLFLIKCVKEEENGVSAPRAVVLANGDIEIAG
NGHYRSAGTKSSAPLMGATNGINGSAPASPTIQSNGHVDNGTGSYPDSPW
PSPTRISDSAACDHSSSSLHTNPGTLLPSCSHTALLSGRSGSSKSLPLGD
EPKRRRYNYSIYASFLDH
BO28193.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kar-PB | 612 | CG12286-PB | 1..612 | 1..612 | 3186 | 100 | Plus |
| kar-PA | 553 | CG12286-PA | 1..543 | 1..543 | 2813 | 100 | Plus |
| CG11665-PB | 658 | CG11665-PB | 8..234 | 37..265 | 285 | 33.3 | Plus |
| CG11665-PA | 658 | CG11665-PA | 8..234 | 37..265 | 285 | 33.3 | Plus |
| Mct1-PB | 626 | CG3456-PB | 417..603 | 288..473 | 250 | 28.9 | Plus |
