Clone BO28210 Report

Search the DGRC for BO28210

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:282
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG12506-RA
Protein status:BO28210.pep: Imported from assembly
Sequenced Size:355

Clone Sequence Records

BO28210.complete Sequence

355 bp assembled on 2011-06-23

GenBank Submission: KX794664

> BO28210.complete
GAAGTTATCAGTCGACATGCGTTCCTTCATTCTGATTGCCCTCTTCGCCC
TGATTGCCCTGGCTGCTGCTCAAGGCGGACCACAAGGTGGACAGCAGGGT
GGGCAAGGAGGATCTCAAAATGGTCAGCAAGGAGGCCAGCAGGGAGGCTC
CCAGGAAGGATCCCAGGAAGGATCCCAGGAAGGACAACAGGGAGGTCAGC
AGGGAGGTCAGCAGCAGGGTGGTCCTGGCGGTCCATGGGGTCTGCCTCCG
AATGGAACTGAACTCTCCAACAGTACCACAACTTCGACCACTGAGGCTAC
CAGCACTGAATCCAGCAGCACAGAGGTTTCCTCTTCGGCAAGCTTTCTAG
ACCAT

BO28210.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12506-RA 324 CG12506-PA 1..321 17..337 1605 100 Plus
CG13946-RA 300 CG13946-PA 1..293 17..333 945 88 Plus
CG13947-RA 360 CG13947-PA 1..86 17..102 235 84.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12506-RA 471 CG12506-RA 49..369 17..337 1605 100 Plus
CG13946-RA 406 CG13946-RA 7..299 17..333 945 88 Plus
CG13947-RA 483 CG13947-RA 32..117 17..102 235 84.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 773595..773915 17..337 1605 100 Plus
2L 23513712 2L 776542..776834 17..333 945 88 Plus
2L 23513712 2L 779204..779289 17..102 235 84.9 Plus
Blast to na_te.dros performed on 2014-11-26 15:47:12 has no hits.

BO28210.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-23 12:08:10 Download gff for BO28210.complete
Subject Subject Range Query Range Percent Splice Strand
CG12506-RA 21..341 17..339 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:44 Download gff for BO28210.complete
Subject Subject Range Query Range Percent Splice Strand
CG12506-RA 49..369 17..339 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:14 Download gff for BO28210.complete
Subject Subject Range Query Range Percent Splice Strand
CG12506-RA 49..369 17..339 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:14 Download gff for BO28210.complete
Subject Subject Range Query Range Percent Splice Strand
2L 773595..773915 17..339 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:44 Download gff for BO28210.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 773595..773915 17..339 99   Plus

BO28210.pep Sequence

Translation from 16 to 355

> BO28210.pep
MRSFILIALFALIALAAAQGGPQGGQQGGQGGSQNGQQGGQQGGSQEGSQ
EGSQEGQQGGQQGGQQQGGPGGPWGLPPNGTELSNSTTTSTTEATSTESS
STEVSSSASFLDH

BO28210.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12506-PA 107 CG12506-PA 1..107 1..107 550 100 Plus
CG13946-PA 99 CG13946-PA 1..99 1..107 465 86 Plus
CG13947-PA 119 CG13947-PA 1..113 1..107 361 67.3 Plus
lcs-PA 145 CG12794-PA 1..135 1..109 178 40.7 Plus
CG10918-PA 183 CG10918-PA 1..148 1..112 151 34 Plus