BO28210.complete Sequence
355 bp assembled on 2011-06-23
GenBank Submission: KX794664
> BO28210.complete
GAAGTTATCAGTCGACATGCGTTCCTTCATTCTGATTGCCCTCTTCGCCC
TGATTGCCCTGGCTGCTGCTCAAGGCGGACCACAAGGTGGACAGCAGGGT
GGGCAAGGAGGATCTCAAAATGGTCAGCAAGGAGGCCAGCAGGGAGGCTC
CCAGGAAGGATCCCAGGAAGGATCCCAGGAAGGACAACAGGGAGGTCAGC
AGGGAGGTCAGCAGCAGGGTGGTCCTGGCGGTCCATGGGGTCTGCCTCCG
AATGGAACTGAACTCTCCAACAGTACCACAACTTCGACCACTGAGGCTAC
CAGCACTGAATCCAGCAGCACAGAGGTTTCCTCTTCGGCAAGCTTTCTAG
ACCAT
BO28210.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12506-RA | 324 | CG12506-PA | 1..321 | 17..337 | 1605 | 100 | Plus |
CG13946-RA | 300 | CG13946-PA | 1..293 | 17..333 | 945 | 88 | Plus |
CG13947-RA | 360 | CG13947-PA | 1..86 | 17..102 | 235 | 84.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12506-RA | 471 | CG12506-RA | 49..369 | 17..337 | 1605 | 100 | Plus |
CG13946-RA | 406 | CG13946-RA | 7..299 | 17..333 | 945 | 88 | Plus |
CG13947-RA | 483 | CG13947-RA | 32..117 | 17..102 | 235 | 84.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 773595..773915 | 17..337 | 1605 | 100 | Plus |
2L | 23513712 | 2L | 776542..776834 | 17..333 | 945 | 88 | Plus |
2L | 23513712 | 2L | 779204..779289 | 17..102 | 235 | 84.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:47:12 has no hits.
BO28210.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-23 12:08:10 Download gff for
BO28210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12506-RA | 21..341 | 17..339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:44 Download gff for
BO28210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12506-RA | 49..369 | 17..339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:14 Download gff for
BO28210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12506-RA | 49..369 | 17..339 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:14 Download gff for
BO28210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 773595..773915 | 17..339 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:44 Download gff for
BO28210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 773595..773915 | 17..339 | 99 | | Plus |
BO28210.pep Sequence
Translation from 16 to 355
> BO28210.pep
MRSFILIALFALIALAAAQGGPQGGQQGGQGGSQNGQQGGQQGGSQEGSQ
EGSQEGQQGGQQGGQQQGGPGGPWGLPPNGTELSNSTTTSTTEATSTESS
STEVSSSASFLDH
BO28210.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:35:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12506-PA | 107 | CG12506-PA | 1..107 | 1..107 | 550 | 100 | Plus |
CG13946-PA | 99 | CG13946-PA | 1..99 | 1..107 | 465 | 86 | Plus |
CG13947-PA | 119 | CG13947-PA | 1..113 | 1..107 | 361 | 67.3 | Plus |
lcs-PA | 145 | CG12794-PA | 1..135 | 1..109 | 178 | 40.7 | Plus |
CG10918-PA | 183 | CG10918-PA | 1..148 | 1..112 | 151 | 34 | Plus |