Clone BO28211 Report

Search the DGRC for BO28211

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:282
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG30016-RA
Protein status:BO28211.pep: Imported from assembly
Sequenced Size:373

Clone Sequence Records

BO28211.complete Sequence

373 bp assembled on 2012-04-25

GenBank Submission: KX798350

> BO28211.complete
GAAGTTATCAGTCGACATGGATGCACGCAAGTTTTCTACCCACATATTGG
ATACTTCGGTGGGAAAGGCGGCAGCCAATGTGAGAGTAACAGTTTCCAGG
CTGGACGAGATTCAGGAATGGAGATCCCTTCGGGCGGCCCAAACTGATGC
GGATGGTCGCTGCCTGCTCTTGGAACCTGGTCAATTTCCCGGCGGGATCT
ATAAGCTGACCTTTCACGTGGGCGCCTATTACGCGGAGCGCAATGTGAGG
ACACTTTATCCAGCAATTGACTTGATTGTGGATTGCAGTGAGAATCAGAA
CTATCACATTCCTTTGTTACTCAATCCCTTTGGGTATTCCACATATCGTG
GAACAGCAAGCTTTCTAGACCAT

BO28211.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG30016-RA 342 CG30016-PA 1..339 17..355 1680 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG30016-RA 446 CG30016-RA 22..360 17..355 1680 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10874978..10875284 355..49 1535 100 Minus
Blast to na_te.dros performed on 2014-11-28 12:28:18 has no hits.

BO28211.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 18:28:38 Download gff for BO28211.complete
Subject Subject Range Query Range Percent Splice Strand
CG30016-RA 22..360 17..357 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:39 Download gff for BO28211.complete
Subject Subject Range Query Range Percent Splice Strand
CG30016-RA 22..360 17..357 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:04:57 Download gff for BO28211.complete
Subject Subject Range Query Range Percent Splice Strand
CG30016-RA 22..360 17..357 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:04:57 Download gff for BO28211.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10874974..10875283 50..357 99 <- Minus
2R 10875339..10875371 17..49 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:39 Download gff for BO28211.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6762479..6762788 50..357 99 <- Minus
arm_2R 6762844..6762876 17..49 96   Minus

BO28211.pep Sequence

Translation from 16 to 373

> BO28211.pep
MDARKFSTHILDTSVGKAAANVRVTVSRLDEIQEWRSLRAAQTDADGRCL
LLEPGQFPGGIYKLTFHVGAYYAERNVRTLYPAIDLIVDCSENQNYHIPL
LLNPFGYSTYRGTASFLDH

BO28211.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG30016-PA 113 CG30016-PA 1..113 1..113 595 100 Plus