BO28226.complete Sequence
1771 bp assembled on 2011-07-19
GenBank Submission: KX794994
> BO28226.complete
GAAGTTATCAGTCGACATGACCACTTGGACTAGCTTGTTCCTGCTTTTGG
GCCTTGGCCTTCTGGCTGTCGATGCCGCGGCGCCCTGGTGGAAGACCGCT
TCCTTCTACCAGATCTACCCGCGCTCCTTCAAAGACAGTGACGGAAATGG
AGTCGGAGACTTAAACGGGGTGACCGAGAAGCTGGAGTACCTTAAGGAGA
TCGGCGTGACCGCCACCTGGCTGTCTCCTTTTCTGAAATCCCCGATGGCA
GACTTTGGCTATGACATTTCCGATTTCAAGGCGGTCGACCCTCTTTTCGG
AACGATGGAGGACTTCGAGAATATGGTCTCCCGCGCCAAGGAGCTGGGTG
TCAAGATTATTCTCGACTTCGTGCCCAATCATTCCAGTGATGAGTGCGAT
TGGTTCCTTCGTTCGGCTGCCGGCGAGGAGGAGTACAAGGACTACTACAT
GTGGCACCCGGGATTCCTCGATGAGGACGGAACCCGTCGCCCGCCTACCA
ACTGGGTGAGCGTGTTCCGCGGCAGCGCATGGGAGTGGCACGAGGGTCGC
CAGGAGTACTATCTTCATCAATTCCACAAGAAGCAACCGGACTTCAACTT
CCGTAATCCCGTGGTGCGCGAGGAGATGAACAACGTGCTGCGATTCTGGC
TGGAAAAGGGCGTCGATGGTTTCCGCGTGGATGCCATCTACCACGCCTTT
GAGATTGAGGCCGACGAGAACGGAAACTATCCGGATGAGCCCCGCAACGA
TTGGACCAACGATCCAGATGAGTACGGATACACCCACAAGATCTACACTG
TGGATCAGCCAGAGACCCCGCACTTGGTATACGAATGGCGCCAAATTCTT
GAGCAGTTCCAGGCTGACAATGGCGGTGATGAGCGCATATTGATGGTGGA
GACCTGGTCCCCCATTGAAATCGTAATGCATTACTATGGCAACGAAACCG
CCGATGGAGCCCAGATACCGTTCAATTTCCAGCTGATAAGTAATCTGCAC
TACGATTCCGATGCCTATCATTACGAGTACTTGATTAACAACTGGCTTAA
TCTGATGCCAGAGGGGAAGAGCGCCAACTGGGTGATCGGTAACCATGACA
AGAACCGTGTGGGCTCTCGATTCGGAGCCGATCGAGTTGACCTCTTCAAC
ATCCTGCTTCTCACTCTGCCCGGCTGCAGCATCACGTACCAGGGCGAGGA
GCTGGGCATGCTCGACGGATATGTGTCCTGGGAGGACACCGTGGATCCGC
AAGCCTGCAACGGCTACGAGGCAAACTACATGGATAACTCCCGCGACCCA
GCCCGCACTCCGATGCACTGGTCGGATGAGACGATGGCTGGATTCACCAC
TGGCAACAGCACCTGGCTGCCGGTATCCACGGATTATCGCCAGAGGAACG
TGAAAACCGAGCGCGGCGTGTCCCTGAGCCACCTGAACGTGTTCAAGCGT
CTGCAGCAGCTCCGTCAGGAGCCCAGCATTGAAGAAGGATCCGCCGAGGT
CAAGGCTGTTAGCAACTACGTCCTGGCCGTCAAGCGCCACCTGAGCGGCG
ACTTCGTCTACATCTCTCTCTTCAACATCTTCGACTCCATCGAGAATGTG
AACCTATCCAGTGTGTTTGGCAGCCTGCCCGCCAAGTTCCAGTACGCCCT
GGTCACCGAGAAGTCCATCAAGAAGGTCGGCGACCAGGTGTCCGCCGGCA
GCGTCACCCTCATGCCCCACGAGTCCATTGTGCTGCGTTCCACAACAACA
GCTGCAAGCTTTCTAGACCAT
BO28226.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A4-RA | 1740 | CG8693-PA | 1..1737 | 17..1753 | 8685 | 100 | Plus |
Mal-A3-RA | 1725 | CG8695-PA | 277..438 | 296..457 | 300 | 79 | Plus |
Mal-A5-RC | 1836 | CG30359-PC | 130..632 | 86..591 | 275 | 70.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A4-RA | 1786 | CG8693-RA | 10..1746 | 17..1753 | 8685 | 100 | Plus |
Mal-A3-RA | 1795 | CG8695-RA | 313..474 | 296..457 | 300 | 79 | Plus |
Mal-A5-RC | 1988 | CG30359-RC | 222..724 | 86..591 | 275 | 70.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8458824..8459635 | 17..828 | 4060 | 100 | Plus |
2R | 25286936 | 2R | 8460094..8460546 | 1084..1536 | 2265 | 100 | Plus |
2R | 25286936 | 2R | 8460627..8460844 | 1536..1753 | 1090 | 100 | Plus |
2R | 25286936 | 2R | 8459809..8460008 | 885..1084 | 1000 | 100 | Plus |
2R | 25286936 | 2R | 8457357..8457518 | 457..296 | 300 | 79 | Minus |
2R | 25286936 | 2R | 8459697..8459753 | 829..885 | 285 | 100 | Plus |
2R | 25286936 | 2R | 8472078..8472269 | 85..276 | 240 | 75 | Plus |
2R | 25286936 | 2R | 8451519..8451801 | 388..106 | 230 | 72.1 | Minus |
2R | 25286936 | 2R | 8463133..8463533 | 188..591 | 230 | 71 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:05:37 has no hits.
BO28226.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-19 13:40:23 Download gff for
BO28226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8693-RA | 1..1737 | 17..1755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:26 Download gff for
BO28226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A4-RA | 10..1746 | 17..1755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:58 Download gff for
BO28226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A4-RA | 10..1746 | 17..1755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:58 Download gff for
BO28226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8458824..8459635 | 17..828 | 100 | -> | Plus |
2R | 8459697..8459753 | 829..885 | 100 | -> | Plus |
2R | 8459810..8460008 | 886..1084 | 100 | -> | Plus |
2R | 8460095..8460546 | 1085..1536 | 100 | -> | Plus |
2R | 8460628..8460844 | 1537..1755 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:26 Download gff for
BO28226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4346329..4347140 | 17..828 | 100 | -> | Plus |
arm_2R | 4347202..4347258 | 829..885 | 100 | -> | Plus |
arm_2R | 4347315..4347513 | 886..1084 | 100 | -> | Plus |
arm_2R | 4347600..4348051 | 1085..1536 | 100 | -> | Plus |
arm_2R | 4348133..4348349 | 1537..1755 | 99 | | Plus |
BO28226.pep Sequence
Translation from 16 to 1771
> BO28226.pep
MTTWTSLFLLLGLGLLAVDAAAPWWKTASFYQIYPRSFKDSDGNGVGDLN
GVTEKLEYLKEIGVTATWLSPFLKSPMADFGYDISDFKAVDPLFGTMEDF
ENMVSRAKELGVKIILDFVPNHSSDECDWFLRSAAGEEEYKDYYMWHPGF
LDEDGTRRPPTNWVSVFRGSAWEWHEGRQEYYLHQFHKKQPDFNFRNPVV
REEMNNVLRFWLEKGVDGFRVDAIYHAFEIEADENGNYPDEPRNDWTNDP
DEYGYTHKIYTVDQPETPHLVYEWRQILEQFQADNGGDERILMVETWSPI
EIVMHYYGNETADGAQIPFNFQLISNLHYDSDAYHYEYLINNWLNLMPEG
KSANWVIGNHDKNRVGSRFGADRVDLFNILLLTLPGCSITYQGEELGMLD
GYVSWEDTVDPQACNGYEANYMDNSRDPARTPMHWSDETMAGFTTGNSTW
LPVSTDYRQRNVKTERGVSLSHLNVFKRLQQLRQEPSIEEGSAEVKAVSN
YVLAVKRHLSGDFVYISLFNIFDSIENVNLSSVFGSLPAKFQYALVTEKS
IKKVGDQVSAGSVTLMPHESIVLRSTTTAASFLDH
BO28226.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:03:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A4-PA | 579 | CG8693-PA | 1..579 | 1..579 | 3137 | 100 | Plus |
Mal-A3-PA | 574 | CG8695-PA | 7..571 | 7..573 | 1923 | 60.1 | Plus |
Mal-A5-PA | 630 | CG30359-PA | 44..602 | 24..582 | 1902 | 60.7 | Plus |
Mal-A5-PC | 611 | CG30359-PC | 44..583 | 24..582 | 1819 | 58.8 | Plus |
Mal-A5-PB | 534 | CG30359-PB | 1..506 | 77..582 | 1663 | 59.2 | Plus |