BO28229.complete Sequence
775 bp assembled on 2011-06-23
GenBank Submission: KX799058
> BO28229.complete
GAAGTTATCAGTCGACATGGAACGCTGGCATGATCGCGTGGCTGTGGTCA
CGGGTGCCAGCTCCGGGATAGGAGCTGCAGTGGCACGCCACTTGGTGAGT
GCAGGGGTCATTGTTGTAGGTCTGGCCCGTCGGGTCGACCGCATGAAGGC
TATCAAGGAACAACTGCCGCCGGAGCTGCAGGGCCGCCTACATGCCATCC
ACTGCGATGTCGAAGATCTGGACTCGGTGACGGCTGCCTTTGACTGGATC
GAGGAGCAGCTCGGCGGATGTGACATCCTGGTGAACAACGCGGGATGCCT
GAACCCCGGACAACTTCTCACCCTGGAGCTAGAGCAGCTGCAGCAGGTCC
TGAACGTGAACTTGATGGGCGTGGTCATCTGCACCCGCCGCGCCTTTCGC
TCAATGCAGCAACGCGAGGTGGATGGCCATGTGATCCTCATTAACAGCCT
AACGGGCCGTAACATCATCAATCCACCTGGTGACGAGCTGCAGGTGCTCA
ACATGTATCCGCTTACCAAGCACGGGGTTACGGCCATGTTGGAAGTCCTG
CGACAGGAGCTGCGCGGATTCAAGACTAAGATAAAGGTCACAAGCATCAC
TCCAGGTGTGACCGATACGGAGATTCTGCCCTCCGGCTACGGTATTTTGC
CGATGCTAAAACCGGATGACATTGCCGCAGGCATCATGTACGTGCTCGGC
ACACCCGCACATGTCCAGGTGCACGAGCTGACCATTAAGCCGTTAGGAGA
GCCTTTCGCAAGCTTTCTAGACCAT
BO28229.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40486-RC | 744 | CG40486-PC | 1..741 | 17..757 | 3690 | 99.9 | Plus |
| CG40486-RB | 744 | CG40486-PB | 1..741 | 17..757 | 3690 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40486-RC | 960 | CG40486-RC | 127..867 | 17..757 | 3690 | 99.9 | Plus |
| CG40486-RB | 940 | CG40486-RB | 127..867 | 17..757 | 3690 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22959390..22959965 | 592..17 | 2865 | 99.8 | Minus |
| X | 23542271 | X | 22958949..22959113 | 757..593 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:49:58 has no hits.
BO28229.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-23 12:48:33 Download gff for
BO28229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40486-RB | 112..852 | 17..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:18 Download gff for
BO28229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40486-RB | 112..852 | 17..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:11 Download gff for
BO28229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40486-RB | 127..867 | 17..759 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:11 Download gff for
BO28229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22958947..22959113 | 593..759 | 98 | <- | Minus |
| X | 22959390..22959965 | 17..592 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:18 Download gff for
BO28229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 22360783..22360949 | 593..759 | 98 | <- | Minus |
| arm_X | 22361226..22361801 | 17..592 | 99 | | Minus |
BO28229.pep Sequence
Translation from 16 to 775
> BO28229.pep
MERWHDRVAVVTGASSGIGAAVARHLVSAGVIVVGLARRVDRMKAIKEQL
PPELQGRLHAIHCDVEDLDSVTAAFDWIEEQLGGCDILVNNAGCLNPGQL
LTLELEQLQQVLNVNLMGVVICTRRAFRSMQQREVDGHVILINSLTGRNI
INPPGDELQVLNMYPLTKHGVTAMLEVLRQELRGFKTKIKVTSITPGVTD
TEILPSGYGILPMLKPDDIAAGIMYVLGTPAHVQVHELTIKPLGEPFASF
LDH
BO28229.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:35:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40486-PC | 247 | CG40486-PC | 1..247 | 1..247 | 1267 | 100 | Plus |
| CG40486-PB | 247 | CG40486-PB | 1..247 | 1..247 | 1267 | 100 | Plus |
| CG40485-PB | 247 | CG40485-PB | 1..247 | 1..247 | 798 | 61.1 | Plus |
| antdh-PA | 250 | CG1386-PA | 1..248 | 1..245 | 694 | 54.8 | Plus |
| CG8757-PB | 252 | CG8757-PB | 1..252 | 1..247 | 599 | 47.8 | Plus |
