BO28250.complete Sequence
388 bp assembled on 2012-10-15
GenBank Submission: KX799538
> BO28250.complete
GAAGTTATCACTCGGCATGCAATCCGTGACCAGACAAACGGCGCGAGTCC
TGCCCCAAATGGGCAAACAAGTGAGCTATCTATCGACGAGTGGCGCTTGG
CGGGCAACCGCCAGCGGTGGCGACATGGTGGTCGAGATCAAGGAACCAAA
GACGCGCACCGAGAAGCTAATGGCCTTCCAGAAGAAGCTGCGCGCTAAAA
CGCCGCTGGGCAAGCTGGATGAATTCTCGCGACATCCGTACCAGGAGAAG
GAACCACTCAAGCCCTGGCCCAATCAGACCAATCCGTATACGGGCGAGAT
CGGCGGACCAGCCGGGCCGGAGCCCACACGCTACGGCGACTGGGAGCGCA
AGGGACGCGTCTCCGATTTCGCAAGCTTTCTAGACCAT
BO28250.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:36:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sirup-RC | 357 | CG7224-PC | 1..354 | 17..370 | 1770 | 100 | Plus |
Sirup-RA | 357 | CG7224-PA | 1..354 | 17..370 | 1770 | 100 | Plus |
CG15283-RB | 381 | CG15283-PB | 240..378 | 232..370 | 335 | 82.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:36:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sirup-RC | 727 | CG7224-RC | 245..598 | 17..370 | 1770 | 100 | Plus |
Sirup-RA | 650 | CG7224-RA | 168..521 | 17..370 | 1770 | 100 | Plus |
CG15283-RB | 641 | CG15283-RB | 302..440 | 232..370 | 335 | 82.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7999247..7999547 | 70..370 | 1505 | 100 | Plus |
2L | 23513712 | 2L | 14450483..14450621 | 370..232 | 335 | 82.7 | Minus |
2L | 23513712 | 2L | 7999113..7999167 | 17..71 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:36:03 has no hits.
BO28250.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-15 09:58:46 Download gff for
BO28250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7224-RA | 180..533 | 17..372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:33 Download gff for
BO28250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sirup-RA | 168..521 | 17..372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:07:35 Download gff for
BO28250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sirup-RA | 168..521 | 17..372 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:07:35 Download gff for
BO28250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7999113..7999167 | 17..71 | 100 | -> | Plus |
2L | 7999249..7999547 | 72..372 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:33 Download gff for
BO28250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7999113..7999167 | 17..71 | 100 | -> | Plus |
arm_2L | 7999249..7999547 | 72..372 | 99 | | Plus |
BO28250.pep Sequence
Translation from 16 to 388
> BO28250.pep
MQSVTRQTARVLPQMGKQVSYLSTSGAWRATASGGDMVVEIKEPKTRTEK
LMAFQKKLRAKTPLGKLDEFSRHPYQEKEPLKPWPNQTNPYTGEIGGPAG
PEPTRYGDWERKGRVSDFASFLDH
BO28250.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sirup-PC | 118 | CG7224-PC | 1..118 | 1..118 | 632 | 100 | Plus |
Sirup-PA | 118 | CG7224-PA | 1..118 | 1..118 | 632 | 100 | Plus |
CG15283-PB | 126 | CG15283-PB | 56..126 | 48..118 | 289 | 70.4 | Plus |