BO28301.complete Sequence
730 bp assembled on 2011-06-29
GenBank Submission: KX797240
> BO28301.complete
GAAGTTATCAGTCGACATGTTCCGAATCGCTCGTGTTATTTGGCTGCTGC
AGTTGCTGCTGCTGTTGGATCTCAAATTTTCCAACGCCGAGCCGCACAAC
AAACAACTGACTGTATTCGCGGAAGCTGGTCGACAGGAGTGCTTTTATCA
GCCGATTGCCACCACCGAGAACATTAAAATCGACTATCAGGTGATACATG
GAGGTCTCGGCGAGACACACATCAATTTTAATCTTATGGATCCAAGTCGT
CGACTTCTGATAGCAGAAACCAAAAGGCAAATGGGGAAACACAGCATTCA
GGCTAACGAAACTGGTTCTTATAAGTTTTGCTTCGATAATACCATCAGCA
CTTTTAACCAAAAGATAGTTTCGTTTACTCTTGAAGTAGCTCCGGCCGAT
CGAGAAGAGCGGGAATTGCGTGATCTTCGCCAGGAAATGTTAACCGACTA
CCACTTTGACGTGGCCTATACTGGTATCGATAGTTACGTGGGCAAGATCC
ATGTGAACCTCATGAGATCGCGTCAAACTCAGGACTTCATTCGAGCGATC
GAGGCCAGGGATCGCAACGTGGCCGAATCCACCTACTCCATGGTCAACAA
ATGGTCGTGGGCCCAATTTTTGTCCATGATATTTGTTGGCTTTCTACAGG
TCTTGATGGTCAGGAGTATTTTTAATACGACTGGAACGTTTTACAAGTTT
TGGAAAAGTTTTGCAAGCTTTCTAGACCAT
BO28301.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:31:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31787-RA | 699 | CG31787-PA | 1..696 | 17..712 | 3465 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:31:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31787-RA | 876 | CG31787-RA | 87..782 | 17..712 | 3465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:31:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18284939..18285634 | 712..17 | 3465 | 99.9 | Minus |
Blast to na_te.dros performed 2014-11-26 16:31:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6833 | 67..29 | 134 | 85 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6530..6582 | 70..22 | 119 | 77.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2688 | 66..8 | 118 | 71.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2829 | 80..29 | 118 | 71.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1563..1596 | 67..34 | 116 | 82.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2297..2335 | 77..39 | 114 | 76.9 | Minus |
BO28301.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-29 12:27:10 Download gff for
BO28301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31787-RA | 56..746 | 22..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:06 Download gff for
BO28301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31787-RA | 56..746 | 22..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:15 Download gff for
BO28301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31787-RA | 92..782 | 22..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:15 Download gff for
BO28301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18284937..18285629 | 22..714 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:06 Download gff for
BO28301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18284937..18285629 | 22..714 | 99 | | Minus |
BO28301.pep Sequence
Translation from 16 to 730
> BO28301.pep
MFRIARVIWLLQLLLLLDLKFSNAEPHNKQLTVFAEAGRQECFYQPIATT
ENIKIDYQVIHGGLGETHINFNLMDPSRRLLIAETKRQMGKHSIQANETG
SYKFCFDNTISTFNQKIVSFTLEVAPADREERELRDLRQEMLTDYHFDVA
YTGIDSYVGKIHVNLMRSRQTQDFIRAIEARDRNVAESTYSMVNKWSWAQ
FLSMIFVGFLQVLMVRSIFNTTGTFYKFWKSFASFLDH
BO28301.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31787-PA | 232 | CG31787-PA | 1..232 | 1..232 | 1206 | 100 | Plus |
| opm-PA | 242 | CG9053-PA | 11..238 | 7..230 | 427 | 38.8 | Plus |
| opm-PC | 242 | CG9053-PC | 11..238 | 7..230 | 427 | 38.8 | Plus |
| p24-1-PB | 210 | CG1967-PB | 32..197 | 41..219 | 170 | 28.5 | Plus |
| p24-1-PA | 210 | CG1967-PA | 32..197 | 41..219 | 170 | 28.5 | Plus |
