BO28305.complete Sequence
595 bp assembled on 2011-06-27
GenBank Submission: KX795624
> BO28305.complete
GAAGTTATCAGTCGACATGGATATTTCCAAGGCCGAGAGTCAAACGCCCG
CCGGAGATCGTCGATCTGCGAGTCCTGATTATCTGAGAACTCTGCTGCAG
GACATCCTGTGTTTCCTGGTCCTGCTCTCGGTGGCCTTGCTAATTGTGGC
TGGCATTTTGTTTGTGGTGGAGGACGTAAGCCGGCTCCAGCAGCAGCACC
AACACCAGCCGTACCACCACCACCATCATCGCCACATGCGTCCGGATCAG
ATAGCCAATGAACTAAAAGGATCGCCGATCGAGGAGGCACCGAGGGAGCA
AGGTCAAGTCTTCCGACCGCACACATGGATTCGATTCTTTAACTGCAGGA
ACAAGGTGCCACAGCAACAGCAGGAAAAAGTTGAAAGGGAGGCGGTTCAG
TTTGGCCCACCAACGCAAGACGATCAGGCGCAGCAGATCCCATTAGATGC
CGTTCAAACTTATCGCCCTGCCATAGAACCTATATCGCTGCGCTCTGGCG
GAGATTACATAGATGAAACGATCAACAAAAACCCGAATCCGGAACTTCGC
CATTTTCTGCCCAATAATATTATGATCGCAAGCTTTCTAGACCAT
BO28305.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1288-RB | 564 | CG1288-PB | 1..561 | 17..577 | 2805 | 100 | Plus |
| CG1288-RA | 564 | CG1288-PA | 1..561 | 17..577 | 2805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1288-RB | 902 | CG1288-RB | 122..682 | 17..577 | 2805 | 100 | Plus |
| CG1288-RA | 1725 | CG1288-RA | 122..682 | 17..577 | 2805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7207760..7208310 | 567..17 | 2740 | 99.8 | Minus |
Blast to na_te.dros performed 2014-11-26 15:47:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2369 | 188..250 | 135 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6888 | 188..234 | 129 | 78.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2457..2503 | 188..234 | 127 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2398 | 182..234 | 121 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6817 | 188..250 | 117 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2434 | 182..267 | 115 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2395 | 188..236 | 112 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6795 | 188..249 | 112 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6822 | 188..234 | 109 | 70.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3288..3373 | 182..268 | 108 | 59.8 | Plus |
BO28305.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:52 Download gff for
BO28305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1288-RA | 106..666 | 17..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:43 Download gff for
BO28305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1288-RA | 106..666 | 17..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:53 Download gff for
BO28305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1288-RA | 122..682 | 17..579 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:53 Download gff for
BO28305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7207764..7208310 | 17..563 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:43 Download gff for
BO28305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3033486..3034032 | 17..563 | 100 | | Minus |
BO28305.pep Sequence
Translation from 16 to 595
> BO28305.pep
MDISKAESQTPAGDRRSASPDYLRTLLQDILCFLVLLSVALLIVAGILFV
VEDVSRLQQQHQHQPYHHHHHRHMRPDQIANELKGSPIEEAPREQGQVFR
PHTWIRFFNCRNKVPQQQQEKVEREAVQFGPPTQDDQAQQIPLDAVQTYR
PAIEPISLRSGGDYIDETINKNPNPELRHFLPNNIMIASFLDH
BO28305.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1288-PB | 187 | CG1288-PB | 1..187 | 1..187 | 991 | 100 | Plus |
| CG1288-PA | 187 | CG1288-PA | 1..187 | 1..187 | 991 | 100 | Plus |
