BO28308.complete Sequence
1966 bp assembled on 2011-07-19
GenBank Submission: KX794112
> BO28308.complete
GAAGTTATCAGTCGACATGTTAAAGCCATCCAGGCGACCATTAGCCAACA
GACAACGATCACTTCGATTCCGTCCACAGAATCGCAAAGGAACATCATCT
AGTAACACCTCAATGGGACTGGACTTCGAGCTGGATGAGAAGAACGAAGA
TCAGGCAGATGAAAATGAAAAGAGTAGCTATGTCAGCCTCTCCAGGCCGA
GCTCCAAAGTACTAGATACGAGAAGTGCCAGTAGCTTGGACTTCGGGGAC
CACTGTAGTCCCAGTATAACAAAATTACCCAAGAACAGCAGGGAAGGTAA
GGAGGTCAGCCTAATCATGAGTGATGAAGAGCCGGAAGATTACAGAAAGG
GTCTGGGCTCGAAGAGGAGGTTGCCAGACTCGGAAGCCCTTGGCAGCAAG
CTAAAGGAGGAACTCTGCAAGTACAAGCAGGAGCTCAAGGACTACAACGA
AAGCACCAAGGATCTGGAGGAGAAGTACATGAAAATTAACTACGAGCTGT
GCGAAATGCAGCAGAAGCACGATCAGTTCGTGTCCAGCAGGAAGCAGGCC
CAGCAAATGGATCTGGGAAGTGAGCCCGATCCGGATGGATTTTATAGCTC
TGCCAGCAGTGTCACCTCGCAGACGACCATCAGACGAAAGAGCCCCCAAA
TCCTGCGCAGCAATACCAGTTTCATGACCGTTCTATCGGGCCAGAGTTCC
TGCGACGAAATCGATAGAAAGAAATACGCGTCCGAAAGGAGTACTCATCA
GCAGAATCACCATCGGCACAAGGACGATCTGCCATCACAGGTGAACAGCG
TTTTTGACAGCCGTATTGTGGAAACACTGGCGAACCGTCACGTGAAGCGC
AGGAAGAGATCCTTGGAGCAGGACGATCGGGAAAGGGAGCCAGCATCCTT
CAAGGATGTGTACAATGTGCTGAAGGATGTGATCAACACCTCACAGGATC
AGAAGTACAAGCATGAACGGGATCGAGGTAGGGACAGAGACAGGGACAGG
GACTCTGGAGATATAAGCCAGCTCCTTACCACCATTAAGGGACTGAAGAG
CGAGCAGGTCCAGTTTCGAACTCTCATTCGGCAGCAGCAGGAGAGAATAT
CGGACTACCACACGCGGTGTGTGAAAGCCCAGGACATCATGAGCACCCAG
AAGCAGGAGATCGAGAAGCTGCACGTGAATAACAAGCAGTTGGAGTCGAG
CATCTACCATGACATAGACAGTCTGCGATCCAAGATAGACAACAAACTGA
AAAGTGTCTCCCATTTGCCGAAGATGATGCGAGACGAGCACTCCAAGTAC
GAGACGGTAATGCGGGAAAATTGTCTGCTGGCGGATAAACTTCATGCCCT
CCAACAGGAAGCCATGCAGCTGAAGGTCAAAATAGATGAACTGGGCCGTC
GAAAGTTGGTCACCATCAACCGGCTGAAGGCCGCCGAAAGGGATCTGAAG
ATCTTTAAGAACTACAACTCGGCCTTGAAGACGGAGAAGCGGAAACTGAC
CCAGGAGCTGTCCACCATGAAGGATCAGCTGGAGCAGCTCCAGGCGAGCA
GCAAAAGGCAACTTTCCCGCCATCGCGAGCAGAGCGAAAAGCAGCGCAGG
GATCTGCAGAAGAAGATCTACGACCTCGAACTGAAGCTGAGTAGGAGCCA
AAACTCGACGTCCAGTTTGATCCAGGAACGGGATAGTCTGATAGCTGAGC
TCCAGACGCAACTCCACACCCTGGTCCACAACTTCGAGGTCTCGCAGAAA
CACATAAGGGTTCTCCGGCGGCACATCTACTCCATGACGAATCAGGGTGG
CACGGGCATCGTTGGCAGTGGGTCGGCTGGCATTGCCCACTTGACATCAG
GTGGTTCCCATCGACCCAGTCTGATCAGGATCAATCAGCTGCCCCAGGGA
ACCAGCAACGGTCGATTTGCAGCCCCCCGAACTCTAAAGGCGACGATCGC
AAGCTTTCTAGACCAT
BO28308.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8851-RC | 2172 | CG8851-PC | 238..2169 | 17..1948 | 9615 | 99.8 | Plus |
| CG8851-RA | 1935 | CG8851-PA | 1..1932 | 17..1948 | 9615 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8851-RC | 2390 | CG8851-RC | 273..2204 | 17..1948 | 9615 | 99.8 | Plus |
| CG8851-RA | 2275 | CG8851-RA | 158..2089 | 17..1948 | 9615 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:01:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3521365..3522369 | 944..1948 | 4995 | 99.8 | Plus |
| 2L | 23513712 | 2L | 3520379..3521309 | 17..947 | 4640 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:01:43 has no hits.
BO28308.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-19 12:48:25 Download gff for
BO28308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8851-RA | 123..2049 | 22..1950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:17 Download gff for
BO28308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8851-RA | 163..2089 | 22..1950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:03 Download gff for
BO28308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8851-RA | 163..2089 | 22..1950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:03 Download gff for
BO28308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3520384..3521308 | 22..946 | 99 | -> | Plus |
| 2L | 3521368..3522369 | 947..1950 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:17 Download gff for
BO28308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3520384..3521308 | 22..946 | 99 | -> | Plus |
| arm_2L | 3521368..3522369 | 947..1950 | 99 | | Plus |
BO28308.pep Sequence
Translation from 16 to 1966
> BO28308.pep
MLKPSRRPLANRQRSLRFRPQNRKGTSSSNTSMGLDFELDEKNEDQADEN
EKSSYVSLSRPSSKVLDTRSASSLDFGDHCSPSITKLPKNSREGKEVSLI
MSDEEPEDYRKGLGSKRRLPDSEALGSKLKEELCKYKQELKDYNESTKDL
EEKYMKINYELCEMQQKHDQFVSSRKQAQQMDLGSEPDPDGFYSSASSVT
SQTTIRRKSPQILRSNTSFMTVLSGQSSCDEIDRKKYASERSTHQQNHHR
HKDDLPSQVNSVFDSRIVETLANRHVKRRKRSLEQDDREREPASFKDVYN
VLKDVINTSQDQKYKHERDRGRDRDRDRDSGDISQLLTTIKGLKSEQVQF
RTLIRQQQERISDYHTRCVKAQDIMSTQKQEIEKLHVNNKQLESSIYHDI
DSLRSKIDNKLKSVSHLPKMMRDEHSKYETVMRENCLLADKLHALQQEAM
QLKVKIDELGRRKLVTINRLKAAERDLKIFKNYNSALKTEKRKLTQELST
MKDQLEQLQASSKRQLSRHREQSEKQRRDLQKKIYDLELKLSRSQNSTSS
LIQERDSLIAELQTQLHTLVHNFEVSQKHIRVLRRHIYSMTNQGGTGIVG
SGSAGIAHLTSGGSHRPSLIRINQLPQGTSNGRFAAPRTLKATIASFLDH
BO28308.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:02:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8851-PC | 723 | CG8851-PC | 80..723 | 1..644 | 3262 | 100 | Plus |
| CG8851-PA | 644 | CG8851-PA | 1..644 | 1..644 | 3262 | 100 | Plus |
| CG3213-PA | 676 | CG3213-PA | 403..669 | 325..593 | 342 | 26.8 | Plus |
| zip-PH | 1964 | CG15792-PH | 1125..1660 | 96..587 | 164 | 20 | Plus |
| zip-PG | 1971 | CG15792-PG | 1117..1652 | 96..587 | 164 | 20 | Plus |
