BO28309.complete Sequence
1387 bp assembled on 2011-06-27
GenBank Submission: KX797510
> BO28309.complete
GAAGTTATCAGTCGACATGCCCCACACAGACGACACATTTCCGGAAGGCA
GTTCTTGTTGTCCTATTGACATTGTTTCCTCAAATAAAGTCATCCTGCGC
GGCTATGCTTCTAAGGCGAATAAGGATGTCGAAGCGGTGGAGGAGCTAGA
AGAGATACAGGAGATGAATGATGAGCTAAGGGATTTGTTCATCAATACAA
CTGCCATCAATTGCTCGTCCCTTTCTGAACTAAAAATCCAGACTGACGCT
TTCAACACCCTTAAAGAGCGTACACTATTCTCATTGGGATACTCGACAGC
CGGGCTTTTAAAGAAATCAAAAATCAGTAAGGTTCTAAAAGGGAAGGTCA
ATTTGTACCAACAGATTGTGAGCCTTGTAAAGCAACGTACAAAGACCAAT
TCAGAGATCACCATAGGAAAGACAAGTCATCCCGTGCACCTGATGGTCTT
ACAGAGCTTTTCGCGAATGTTTCGCGATATGGGCAATGACCTGAGCGTGG
CCCTGCCCGAAAAGATGATTACGCCACGCTCCTTTGGCCTAATCTACGAA
TGGATGATCGAGGACACGCCAGTCTTGCCGCGCCTCGGTCTCCTAGAGGT
TTTCCACGCTGCCAAATTTATGGAGATTCCACAGTTGGTCAGGCAGTGCA
AGTATTGCCTCGATCATGGATTCACTGAGGACTCCGCTGCGATGCTGTAC
TTTGAGGCGAAAATACTGAAACTTGAGGTCATCCATTTGCAATATCTTGA
GCGCGTCTCAAAGTTTTTTCTCACGCTGGTGGCATCGAAAGAGTTTTTGA
GACTGCCGCTGAAATCAATGCTATTGCTCATCCAATCGGATCTGATAGGC
GTGAATACGGAGCTGGAGGTCTTCATGGCAGCCGCTCGGTGGCTAAGCCA
CCACTGGCCTCAAAGAGAGGAAAACGTAACGGATGTTGTATCCAGCATAC
GTTTTGGACTAATCCCGCCGTGGTTGCTCATCCGTTTACAGAAACCGGAT
GTCACATCTGTGGGGGTGGGGAGAATCGTAGCGCAGCCAATTGTGCGCCA
AGCCATTCATGAAGGCATCGCGTACACGACCACGCGGATGTTTTATGGAA
AAGATCGGGAGGCTTTTAAGCACTATTTGCATAAGGCTTGCGTAAAGCCA
CCCGTGCAACGCACTTGGATATACGACCGGAAATGTCCGTATCATCATCG
AATGCAATGCAGGAACACGGTGGACTTAACCTACGACGCGTTCCTTGAAT
ATCTTAATTACACGCAACGCCAGCACCGGGATTATTGGAAATCTCTGGAA
CCAGTAGATGCTAGCAATGTTTGCTTCAGTTGCCAGGCAAAGAAGTCTGA
TTTAACTAAGCCCAACAGTGCAAGCTTTCTAGACCAT
BO28309.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30357-RA | 1356 | CG30357-PA | 1..1353 | 17..1369 | 6735 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30357-RA | 1525 | CG30357-RA | 117..1469 | 17..1369 | 6735 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8720156..8721508 | 1369..17 | 6735 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:48:21 has no hits.
BO28309.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:53 Download gff for
BO28309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30357-RA | 117..1469 | 17..1371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:59 Download gff for
BO28309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30357-RA | 117..1469 | 17..1371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:06 Download gff for
BO28309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30357-RA | 117..1469 | 17..1371 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:06 Download gff for
BO28309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8720153..8721508 | 17..1371 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:59 Download gff for
BO28309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4607658..4609013 | 17..1371 | 99 | | Minus |
BO28309.pep Sequence
Translation from 16 to 1387
> BO28309.pep
MPHTDDTFPEGSSCCPIDIVSSNKVILRGYASKANKDVEAVEELEEIQEM
NDELRDLFINTTAINCSSLSELKIQTDAFNTLKERTLFSLGYSTAGLLKK
SKISKVLKGKVNLYQQIVSLVKQRTKTNSEITIGKTSHPVHLMVLQSFSR
MFRDMGNDLSVALPEKMITPRSFGLIYEWMIEDTPVLPRLGLLEVFHAAK
FMEIPQLVRQCKYCLDHGFTEDSAAMLYFEAKILKLEVIHLQYLERVSKF
FLTLVASKEFLRLPLKSMLLLIQSDLIGVNTELEVFMAAARWLSHHWPQR
EENVTDVVSSIRFGLIPPWLLIRLQKPDVTSVGVGRIVAQPIVRQAIHEG
IAYTTTRMFYGKDREAFKHYLHKACVKPPVQRTWIYDRKCPYHHRMQCRN
TVDLTYDAFLEYLNYTQRQHRDYWKSLEPVDASNVCFSCQAKKSDLTKPN
SASFLDH
BO28309.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30357-PA | 451 | CG30357-PA | 1..451 | 1..451 | 2351 | 100 | Plus |
| CG12857-PA | 440 | CG12857-PA | 70..431 | 81..443 | 491 | 33.7 | Plus |
| CG12857-PB | 293 | CG12857-PB | 70..277 | 81..286 | 284 | 36.2 | Plus |
| CG10801-PA | 558 | CG10801-PA | 208..515 | 130..430 | 284 | 26.2 | Plus |
| CG14785-PA | 470 | CG14785-PA | 151..452 | 115..429 | 281 | 25.2 | Plus |
