Clone BO28311 Report

Search the DGRC for BO28311

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:283
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG10063-RA
Protein status:BO28311.pep: Imported from assembly
Sequenced Size:670

Clone Sequence Records

BO28311.complete Sequence

670 bp assembled on 2011-07-05

GenBank Submission: KX799188

> BO28311.complete
GAAGTTATCAGTCGACATGATTCGCGCCATGGTAATGACCAAATGGAGTA
AGTCGGTGGCGGGACCACTGGTCACGGCGTGGAACTACTCCACATTGAAT
CGGCTCAATGGCAATACTGTGCGCCCGCGTGCTCTGTTCCTGAATCTCGA
CCGCAAGTTCTCCGCCGAAGGTGGCGGCGATGAGAAGCCCAAGAATGTGC
CTCCCGGCTTTGCGGCTCCAGGGTTTCCATCCACCTTGGGCAATAACCCA
GAGAACACTACGCGTAAGGATGTGCCCATTGGCGAGGTGCAGGCGCCAAC
TATTTCCGTAGTGAACGCAGGTGGTAAACTGGGCAGAGCCGAGCCACTGG
AGGCCAGCACCATCGTGCGCAGCAAGGGCACTTCGAACGAGGACAAGATG
ACCGAGGCGCAGAAGAAGGCATCGGAGGCCAAGGAGGCGGCCGCCAAGCA
GTTGCAGGATGTCATGGCCAACTTGCCCAGCAAGGAGCAGACCGAAAAGT
ATTTCTTTCGCGTGGTTGCCTTCTTCTATGACTTGACCTACCTAACCGCC
ACCTGGTTGCTCAACTTTGTCGAGCACAATATCGTTCAAAATGCCAAGGT
GCAGCACTACTGGAAGCGATTCCACGAAAAAATGGAGCAGGCCAAGAAGG
ATGCAAGCTTTCTAGACCAT

BO28311.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10063-RA 639 CG10063-PA 1..636 17..652 3030 98.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10063-RA 827 CG10063-RA 110..745 17..652 3030 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6971661..6972229 652..84 2710 98.4 Minus
3L 28110227 3L 6972292..6972358 83..17 320 98.5 Minus
Blast to na_te.dros performed on 2014-11-26 16:46:03 has no hits.

BO28311.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-05 16:54:34 Download gff for BO28311.complete
Subject Subject Range Query Range Percent Splice Strand
CG10063-RA 64..699 17..654 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:16 Download gff for BO28311.complete
Subject Subject Range Query Range Percent Splice Strand
CG10063-RA 110..745 17..654 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:02 Download gff for BO28311.complete
Subject Subject Range Query Range Percent Splice Strand
CG10063-RA 110..745 17..654 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:02 Download gff for BO28311.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6971659..6972229 84..654 98 <- Minus
3L 6972292..6972358 17..83 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:16 Download gff for BO28311.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6964759..6965329 84..654 98 <- Minus
arm_3L 6965392..6965458 17..83 98   Minus

BO28311.pep Sequence

Translation from 16 to 670

> BO28311.pep
MIRAMVMTKWSKSVAGPLVTAWNYSTLNRLNGNTVRPRALFLNLDRKFSA
EGGGDEKPKNVPPGFAAPGFPSTLGNNPENTTRKDVPIGEVQAPTISVVN
AGGKLGRAEPLEASTIVRSKGTSNEDKMTEAQKKASEAKEAAAKQLQDVM
ANLPSKEQTEKYFFRVVAFFYDLTYLTATWLLNFVEHNIVQNAKVQHYWK
RFHEKMEQAKKDASFLDH

BO28311.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10063-PA 212 CG10063-PA 1..212 1..212 1103 100 Plus