Clone BO28313 Report

Search the DGRC for BO28313

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:283
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG13090-RA
Protein status:BO28313.pep: Imported from assembly
Sequenced Size:1393

Clone Sequence Records

BO28313.complete Sequence

1393 bp assembled on 2011-06-28

GenBank Submission: KX797148

> BO28313.complete
GAAGTTATCAGTCGACATGATGGAATCCGAGGTAGATTCTGAGCGAACCA
TGCTAAAGCGCGAGATCGCCGAGCTGCGCGCAGCGCTCAACCAGAAGGAG
CAGTGTCTGCGAGAATTGGATTCCTTGTTTTCCTTCGCCACAAGGCCAGA
GCAGGAGGTCGTCGGAAATGATCTGGAATCGCCTGATGTTGCAGTCCACA
CGAAGTTGACCAACGACGATATTGCGCGTTACAGCCGCCAGCTTATACTG
CCCGACTTCGGCGTCCAGGGACAATTAAAGCTGAAAAACAGCTCTGTCCT
GATTGTGGGCCTAGGCGGATTGGGATGTCCGGCGGCGCAATACTTGGCGG
CAGCCGGATGCGGACACTTGGGGCTTGTCGACTACGACGAGGTGGAGCGG
AGCAACTTTCACCGCCAGATTCTGCACTCCGAGGACCGTTGTGGTATGTC
CAAGGCTGAATCGGCGAGGATAGCACTGCTCGAACTGAATCCGCACTGCG
AGATTCAGTGCCATTCCAGGATGCTGTACCCTCATAACGCCATGCACATC
ATCCGAGGCTACGACGTGGTTTTGGACTGCACCGATAATGTGCCCACCCG
TTATCTACTCAGCGATGCCTGCGTCATGCTGAGCAAACCCCTTGTCTCCG
GGAGTGCCCTAAAGATGGATGGTCAGCTGACTGTATACAACTATGCCAAC
GGGCCCTGCTACAGGTGTATCTTCCCAGTTCCTCCACCGCCAGAAGCAGT
CACCAATTGCGGAGATGGCGGAGTCCTGGGTGCTGTCACCGGTACAATTG
GCGCAATGCAGGCTCTGGAGGCCATCAAGGTGATTGTGGGAATGGGAGAT
GTCCTCGCCGGACGCCTTCTAATCTTCGATGGCGGTAGCGGCGTGTTTCG
CAATATTCGCATACGCAGCAAGCGACCCAACTGCCATATGTGTTCCGCTC
AGCCGCTGATCACGGAGCTAATCAACTACGAAATGTTCTGCGGTATGCAT
GCAACCGACAAGAACAATCCCATGCTACTTTTGTCGACGGATGAGCGTTT
GTCCGTGGAGGACTACCAACAGAAGATCCAGGCTCAACCACATTTGCTTA
TCGATGTGCGGCCAACTGCAGAATTCGAGATTTGCCAGCTGCCCGAGGCT
GTGAATGTGCCACTGGTAGAGATCCTCGACGACAGCTATCTTAAGCGGCT
TGGCAAGCAATTGGAGGACAAGGAACTGCCCATCGTACTGGTCTGCCGTC
GGGGTAATGATTCGCAGATCGCCGTTCAGCATTTGCGCAACCGATTCCCC
ACGCATTTCGTTCGAGACCTGATTGGCGGACTGCATGCCTGGACGAACAG
TGTAGACCCCAGTTTTCCCATATACGCAAGCTTTCTAGACCAT

BO28313.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13090-RC 1362 CG13090-PC 1..1359 17..1375 6795 100 Plus
CG13090-RB 1362 CG13090-PB 1..1359 17..1375 6795 100 Plus
CG13090-RA 1362 CG13090-PA 1..1359 17..1375 6795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13090-RC 1687 CG13090-RC 178..1536 17..1375 6795 100 Plus
CG13090-RB 1540 CG13090-RB 31..1389 17..1375 6795 100 Plus
CG13090-RA 1684 CG13090-RA 175..1533 17..1375 6795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8517667..8519025 17..1375 6795 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:24:42 has no hits.

BO28313.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 13:01:32 Download gff for BO28313.complete
Subject Subject Range Query Range Percent Splice Strand
CG13090-RA 140..1498 17..1377 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:19 Download gff for BO28313.complete
Subject Subject Range Query Range Percent Splice Strand
CG13090-RA 175..1533 17..1377 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:26 Download gff for BO28313.complete
Subject Subject Range Query Range Percent Splice Strand
CG13090-RA 175..1533 17..1377 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:26 Download gff for BO28313.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8517667..8519025 17..1377 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:19 Download gff for BO28313.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8517667..8519025 17..1377 99   Plus

BO28313.pep Sequence

Translation from 16 to 1393

> BO28313.pep
MMESEVDSERTMLKREIAELRAALNQKEQCLRELDSLFSFATRPEQEVVG
NDLESPDVAVHTKLTNDDIARYSRQLILPDFGVQGQLKLKNSSVLIVGLG
GLGCPAAQYLAAAGCGHLGLVDYDEVERSNFHRQILHSEDRCGMSKAESA
RIALLELNPHCEIQCHSRMLYPHNAMHIIRGYDVVLDCTDNVPTRYLLSD
ACVMLSKPLVSGSALKMDGQLTVYNYANGPCYRCIFPVPPPPEAVTNCGD
GGVLGAVTGTIGAMQALEAIKVIVGMGDVLAGRLLIFDGGSGVFRNIRIR
SKRPNCHMCSAQPLITELINYEMFCGMHATDKNNPMLLLSTDERLSVEDY
QQKIQAQPHLLIDVRPTAEFEICQLPEAVNVPLVEILDDSYLKRLGKQLE
DKELPIVLVCRRGNDSQIAVQHLRNRFPTHFVRDLIGGLHAWTNSVDPSF
PIYASFLDH

BO28313.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13090-PC 453 CG13090-PC 1..453 1..453 2374 100 Plus
CG13090-PB 453 CG13090-PB 1..453 1..453 2374 100 Plus
CG13090-PA 453 CG13090-PA 1..453 1..453 2374 100 Plus
Uba2-PA 700 CG7528-PA 17..163 89..234 204 29.9 Plus
CG1749-PA 404 CG1749-PA 5..195 34..202 175 30.7 Plus