BO28314.complete Sequence
532 bp assembled on 2011-06-29
GenBank Submission: KX794153
> BO28314.complete
GAAGTTATCAGTCGACATGTCTGCAAATTCCAATTCACTAGAAATTTCAC
CGAATAGTACTTTAACTTTCACAAAAACCAACAATAAGCATGAAATAACC
ATCAAAAATGTTGGCGAAAAGACAGTGACCTACAAGGTGCAATGTACAGT
GCATGGCAAGTTCAATATAAAACCCCGCTGGGGAGTCCTCAGTCCCAATG
AGCACTCACATGTCCTCATAACCATGTGCAAGGATGTCGAGCTCTCGAGA
AAGGGACGCGACAAGATAGTGGTCGTTTGCATGGTTTCACCCATCAATGC
TGTGGACTTCGAGATGACCGCCTCCTTCTGGCGTCACAATATCTGCTACG
ATCCAAGTATCGAGAAGCACCAACTCACCTGCCATCAAATGGATGGGGCG
GGCGAGGGCCATGGCGACGGAGGCGACAAGGATGCGGAGCCGGAGGATCT
AAGGTTTCGCCAGGGGTTATTCCCATCATTTTGCAGTATTCGCACTCCGA
GCAAGTACTGGCGAGCAAGCTTTCTAGACCAT
BO28314.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6527-RB | 501 | CG6527-PB | 1..498 | 17..514 | 2445 | 99.4 | Plus |
| CG6527-RA | 501 | CG6527-PA | 1..498 | 17..514 | 2445 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6527-RB | 1917 | CG6527-RB | 158..655 | 17..514 | 2445 | 99.4 | Plus |
| CG6527-RA | 856 | CG6527-RA | 158..655 | 17..514 | 2445 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10558366..10558745 | 514..135 | 1885 | 99.7 | Minus |
| 3L | 28110227 | 3L | 10558804..10558925 | 138..17 | 580 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:32:20 has no hits.
BO28314.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-29 12:27:12 Download gff for
BO28314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6527-RA | 158..655 | 17..516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:25 Download gff for
BO28314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6527-RA | 158..655 | 17..516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:30 Download gff for
BO28314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6527-RA | 158..655 | 17..516 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:30 Download gff for
BO28314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10558806..10558925 | 17..136 | 98 | | Minus |
| 3L | 10558364..10558743 | 137..516 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:25 Download gff for
BO28314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10551906..10552025 | 17..136 | 98 | | Minus |
| arm_3L | 10551464..10551843 | 137..516 | 99 | <- | Minus |
BO28314.pep Sequence
Translation from 16 to 532
> BO28314.pep
MSANSNSLEISPNSTLTFTKTNNKHEITIKNVGEKTVTYKVQCTVHGKFN
IKPRWGVLSPNEHSHVLITMCKDVELSRKGRDKIVVVCMVSPINAVDFEM
TASFWRHNICYDPSIEKHQLTCHQMDGAGEGHGDGGDKDAEPEDLRFRQG
LFPSFCSIRTPSKYWRASFLDH
BO28314.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6527-PB | 166 | CG6527-PB | 1..166 | 1..166 | 906 | 100 | Plus |
| CG6527-PA | 166 | CG6527-PA | 1..166 | 1..166 | 906 | 100 | Plus |
| Vap-33B-PB | 206 | CG33523-PB | 2..135 | 8..141 | 186 | 28.4 | Plus |
| Vap-33B-PA | 234 | CG33523-PA | 30..163 | 8..141 | 186 | 28.4 | Plus |
| Vap-33B-PC | 240 | CG33523-PC | 36..169 | 8..141 | 186 | 28.4 | Plus |
