BO28318.complete Sequence
1462 bp assembled on 2011-06-28
GenBank Submission: KX795465
> BO28318.complete
GAAGTTATCAGTCGACATGGCCGATGGAAAACAGGGCTGGACATGCCTCC
TGGTGCTCATATGTGTGTGCATCACCGTGGGCACCGTCATCCCCGTTGGA
TATGCCTTCGGTGTGATGAATGCTCCGTCCGCCTTCATTAGGTCGTGGAT
AATGGAGTCGGTTCTAGAGCGGTACTCATCACGTCTGGGCGACTCCCAGA
TGACCATAATAATGTCGACCGTGGTCTCCATATTCCTGATAGGTGGCATG
CTGGGTGCTCCGTTTGCCCCGATCTTCAGTGCCCGGCTAGGACGTCGAGG
GATTCTGACGCTTAGTGGATTGCTCTTGTTGGTGTCCTGCATCTGCCAGC
TCTTCTGCCGGATGGCCAACTCCATCGAGATGCTGCTGCTGGGGCGTCTG
ATCGGAGGACTGGCTGCCGCCCTAATCTATGCCACACAGCCCATGTACTT
GGTGGAGTTGGCTCCAGCAGAACTGAGTGGCAGCGTGGGCGTTTTTACTT
GTATCGGGTTAACCGGCGGCATTGTTTTGGGACAGGTCTTTAGCTTTGAT
TTCCTACTGGGCACGGAAAAACTGTGGCCCTACGCGCTGTCCGGTTCCGC
CATTTTCGTATTGATCGGATTGGCACCCATCTTCTGGTTCCCCGAAAGTC
CGCGTTTCCTGATGTCCCAGGGCCGAAGGGAGAAGGCAAGGGTCACGCTG
ATGCGTCTGCGGCGGGATGAGGGGCGTGTGAACGCGGAGATGGCGGAGTT
CGAGGTCAGCTCTACAGATGAGGGTCAGGTCACCATGAAGCAGGTGCTTT
GTAACAGTAAGCTCAAGTTGCCGCTGTTCATCGTTTGCTCCTTCCACTTC
GTCCAGCAGATGAGCGGCATTAGTGCGATATGGTTTTACTCCATAGAGAT
CTTCACCCAATCCGGATTCACTGCAGCCGTGGCCATGTGGCTCAACTTCG
CCTTGGGCCTTTTGAACTTCATATCCGCCCTCATGGGACCCTGGTTAATG
AGAAGCTTTAACAGACGTCTCATGATGACGATCTCCTGCCTCTGCTCTGC
AATCTTTTTGGTCCTACTTGTCGTTGGCCTGGAACTAATGTCGACTATAC
ATGAGTTCTCATTCACCTGCATCGCCTTCCTGTCGCTGTACATCATCACA
TTCAACATGGGTTTGGGACCCACTCCCTACTTTATTGGCTCAGAGATATT
TGAGACAGCTTCGCGTCCTTCGGCAATGGCCCTAGGAAGCTTTTTTAACT
GGCTGGCTAACTTCGTGCTAAACATGATCTTCCCCACCCTGAACTCGGCG
ACTGGACCATTTGTGTTCCTATTATGTGTGGTGTTTTGTGCCTACGGGTT
CCTGTTAACCTATCGATATCTTCCAGAGACGAGAAATCGCGATGCCAAGG
ATGTGGCGCAGCTAATGGAGAACGGCTTCAAGTCTAAGATAAAGGCAAGC
TTTCTAGACCAT
BO28318.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sut3-RA | 1431 | CG17976-PA | 1..1428 | 17..1444 | 7140 | 100 | Plus |
| sut3-RB | 1320 | CG17976-PB | 15..1317 | 142..1444 | 6515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:25:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sut3-RA | 1592 | CG17976-RA | 54..1481 | 17..1444 | 7140 | 100 | Plus |
| sut3-RB | 1584 | CG17976-RB | 54..1473 | 17..1444 | 6985 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8089705..8090448 | 134..877 | 3720 | 100 | Plus |
| 2R | 25286936 | 2R | 8090933..8091186 | 1191..1444 | 1270 | 100 | Plus |
| 2R | 25286936 | 2R | 8090504..8090717 | 877..1090 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 8089535..8089651 | 17..133 | 585 | 100 | Plus |
| 2R | 25286936 | 2R | 8090779..8090882 | 1090..1193 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:25:08 has no hits.
BO28318.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 14:16:36 Download gff for
BO28318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut3-RA | 60..1487 | 17..1446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:30 Download gff for
BO28318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut3-RA | 54..1481 | 17..1446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:38 Download gff for
BO28318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut3-RA | 54..1481 | 17..1446 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:38 Download gff for
BO28318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8089535..8089651 | 17..133 | 100 | -> | Plus |
| 2R | 8089705..8090448 | 134..877 | 100 | -> | Plus |
| 2R | 8090505..8090717 | 878..1090 | 100 | -> | Plus |
| 2R | 8090780..8090882 | 1091..1193 | 100 | -> | Plus |
| 2R | 8090936..8091186 | 1194..1446 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:30 Download gff for
BO28318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3977040..3977156 | 17..133 | 100 | -> | Plus |
| arm_2R | 3977210..3977953 | 134..877 | 100 | -> | Plus |
| arm_2R | 3978010..3978222 | 878..1090 | 100 | -> | Plus |
| arm_2R | 3978285..3978387 | 1091..1193 | 100 | -> | Plus |
| arm_2R | 3978441..3978691 | 1194..1446 | 99 | | Plus |
BO28318.pep Sequence
Translation from 16 to 1462
> BO28318.pep
MADGKQGWTCLLVLICVCITVGTVIPVGYAFGVMNAPSAFIRSWIMESVL
ERYSSRLGDSQMTIIMSTVVSIFLIGGMLGAPFAPIFSARLGRRGILTLS
GLLLLVSCICQLFCRMANSIEMLLLGRLIGGLAAALIYATQPMYLVELAP
AELSGSVGVFTCIGLTGGIVLGQVFSFDFLLGTEKLWPYALSGSAIFVLI
GLAPIFWFPESPRFLMSQGRREKARVTLMRLRRDEGRVNAEMAEFEVSST
DEGQVTMKQVLCNSKLKLPLFIVCSFHFVQQMSGISAIWFYSIEIFTQSG
FTAAVAMWLNFALGLLNFISALMGPWLMRSFNRRLMMTISCLCSAIFLVL
LVVGLELMSTIHEFSFTCIAFLSLYIITFNMGLGPTPYFIGSEIFETASR
PSAMALGSFFNWLANFVLNMIFPTLNSATGPFVFLLCVVFCAYGFLLTYR
YLPETRNRDAKDVAQLMENGFKSKIKASFLDH
BO28318.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:53:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sut3-PA | 476 | CG17976-PA | 1..476 | 1..476 | 2439 | 100 | Plus |
| sut3-PB | 439 | CG17976-PB | 6..439 | 43..476 | 2214 | 100 | Plus |
| sut2-PA | 491 | CG17975-PA | 14..490 | 7..475 | 1125 | 47.4 | Plus |
| sut1-PA | 507 | CG8714-PA | 32..507 | 5..476 | 992 | 42.2 | Plus |
| CG7882-PC | 516 | CG7882-PC | 36..508 | 8..475 | 899 | 40.6 | Plus |
