Clone BO28320 Report

Search the DGRC for BO28320

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:283
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG30355-RA
Protein status:BO28320.pep: Imported from assembly
Sequenced Size:592

Clone Sequence Records

BO28320.complete Sequence

592 bp assembled on 2011-06-27

GenBank Submission: KX794040

> BO28320.complete
GAAGTTATCAGTCGACATGGCTGAAGTCCTAGAGGAATTCATCACCCTAA
CGCCCTTGACTTGTGTGCAACAATGCAATGCTTTACTAGGCTCAACATCA
GGAAAGCCGAGAAGCTGCTCCGTATTTTTTACACTATTTGGCGTATACTG
CGGCGTTCTCATCTTTCGGGCGTATCGCACATATTCCTCTAAGCAAGAAA
GAGACGAGGAAAAGATAACCGAAGGAGTTACCCTTGAGGCTAAGGAGGAA
GATTTGATCATAGGACCTGGTTCCAGTCTTGTGAACGAATATGTAGAACA
AACGAAGCCGATTCTGTTGCAACCCGTCGGTTTTTCCAGTACTGACATGA
GATGGCGCTATTGCAACCACTTGCCGGAAGCAGAATTAGCACAAGGCTCT
GATAGTGAAAACAGATCAACCGAAAGAGATGACATTGATAACCTCGAAAG
GATGAGCAATGTTGTGGATGATAATGATGCGCAGAAGCCAGTTGCATCCA
CATCGATGGCAACGGCTCGGGCGCCTGAGGATAACGCCGATGGTGAGCAC
GTCGAGCCCACACCATTTTCGGTGGCAAGCTTTCTAGACCAT

BO28320.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG30355-RA 561 CG30355-PA 1..558 17..574 2760 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG30355-RA 751 CG30355-RA 121..683 12..574 2770 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8679494..8679833 351..12 1685 99.7 Minus
2R 25286936 2R 8679214..8679438 574..350 1095 99.1 Minus
Blast to na_te.dros performed on 2014-11-26 15:49:39 has no hits.

BO28320.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:57 Download gff for BO28320.complete
Subject Subject Range Query Range Percent Splice Strand
CG30355-RA 121..678 17..576 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:32 Download gff for BO28320.complete
Subject Subject Range Query Range Percent Splice Strand
CG30355-RA 126..683 17..576 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:36 Download gff for BO28320.complete
Subject Subject Range Query Range Percent Splice Strand
CG30355-RA 126..683 17..576 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:36 Download gff for BO28320.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8679211..8679436 352..576 98 <- Minus
2R 8679494..8679828 17..351 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:32 Download gff for BO28320.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4566716..4566941 352..576 98 <- Minus
arm_2R 4566999..4567333 17..351 100   Minus

BO28320.pep Sequence

Translation from 16 to 592

> BO28320.pep
MAEVLEEFITLTPLTCVQQCNALLGSTSGKPRSCSVFFTLFGVYCGVLIF
RAYRTYSSKQERDEEKITEGVTLEAKEEDLIIGPGSSLVNEYVEQTKPIL
LQPVGFSSTDMRWRYCNHLPEAELAQGSDSENRSTERDDIDNLERMSNVV
DDNDAQKPVASTSMATARAPEDNADGEHVEPTPFSVASFLDH

BO28320.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG30355-PA 186 CG30355-PA 1..186 1..186 964 100 Plus