Clone BO28326 Report

Search the DGRC for BO28326

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:283
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG4681-RA
Protein status:BO28326.pep: Imported from assembly
Sequenced Size:1198

Clone Sequence Records

BO28326.complete Sequence

1198 bp assembled on 2011-06-27

GenBank Submission: KX795440

> BO28326.complete
GAAGTTATCAGTCGACATGGCCGAGCTTCTGTCCCGCGAGAAGGAGCTCT
TTAAGATAAACCAGGAGCTGAATCTCCTGACCCTCAGTCCAGCTGCCGAC
GCCATGTATCCGGCAAAGGGGTCATCCAAATCCACTGCGGTGGCGGTGCC
GCGCTTCGCCACCTTCCAGAAACAAAAGGGGCCGAGCAGCCTGCTCCGGA
AAAAGGGTGCTCCCACGGCGTGCACGAAGGCAGCCCCGAAAGCTTCGCCA
GGCAGAGAGACGGTGCCCACAGCCCGTTCGCCGATGCCCGATATGAGTCT
GCTGACCAAGTCCAAGCCCGCTGCCGGACCCACCTCGCCCACCCCCCGCA
ATCTTTCCAAATTTAGTACCTTCACGAAGGATGTGAGCAGCAAGACGGCT
ACGTATGTCAAGTACCGGAACCCAAACTTTAGCGAGAGTCCTTCGTTGGA
CGAACTGCTGCGTAACGACGCCGATGAGGCAAACCGAAAACCAGATGTGG
TCGAAGTGGAGGTCACACAGAAGCGAGAGAGCACAACCGTCGTCAATGGC
CAGCTGAAGAAGCAGGTCACCAAGGACAACTTTATTAAATTCCTCAAGGC
CAAGGTGGCCATTCTGGAAGAGGATCACGCTCAACACGCCGGAGAGTTGA
TCCGACAGAAGGAGCAGCTTGAGCACGCCTTGGAAGCGCAACGCAAGTCA
GAGCACCAGCGCGACCAGGCGATCAACTCCAACAAGCACCTCTCCGAGCA
ACTGATGCGGTCCGAACGGCAGTGCGAGGGTTTCAACCAGCGCCAGAAGG
AGCAGCAGCTCGAGTTCATCACCCAGCAGCGGGAGCTGGAGGTGCTGAAG
CGGGATGCCAAGGTTTCCAGGCAGACGAACATAAACCTGGAGAACCGACT
GTCCCGCGTCCAGGAGGATGCAGACGCTGCCCGCCAGGAACTCAAGCTGC
TGCGCGAGGAGCAGCGCGACCAGTTGGAGGCGCATCGGAAGGAACTAAAG
CTGCGGGACAGCCGGATCCGGGCTCTTAAACGCCAGCGCGGCGACCTGCT
CAACGCGTACAAGAAGCAGCTCTACATGATCGACAACCTGAAGCGCCAGA
CCATCTGTTTGGAGCAGTCGGCAGCCATCGGATTCGGCGAGAAGGAGTTC
AACAAGGTGCTCGACTGGAATGCCAAGACGGCAAGCTTTCTAGACCAT

BO28326.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4681-RA 1167 CG4681-PA 1..1164 17..1180 5805 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4681-RA 1497 CG4681-RA 230..1393 17..1180 5805 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24578351..24578946 1180..585 2965 99.8 Minus
2R 25286936 2R 24579027..24579598 588..17 2845 99.8 Minus
Blast to na_te.dros performed on 2014-11-26 15:50:37 has no hits.

BO28326.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:25:00 Download gff for BO28326.complete
Subject Subject Range Query Range Percent Splice Strand
CG4681-RA 184..1347 17..1182 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:57 Download gff for BO28326.complete
Subject Subject Range Query Range Percent Splice Strand
CG4681-RA 230..1393 17..1182 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:57 Download gff for BO28326.complete
Subject Subject Range Query Range Percent Splice Strand
CG4681-RA 230..1393 17..1182 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:57 Download gff for BO28326.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24578348..24578942 589..1182 99 <- Minus
2R 24579027..24579598 17..588 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:57 Download gff for BO28326.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20465871..20466465 589..1182 99 <- Minus
arm_2R 20466550..20467121 17..588 99   Minus

BO28326.pep Sequence

Translation from 16 to 1198

> BO28326.pep
MAELLSREKELFKINQELNLLTLSPAADAMYPAKGSSKSTAVAVPRFATF
QKQKGPSSLLRKKGAPTACTKAAPKASPGRETVPTARSPMPDMSLLTKSK
PAAGPTSPTPRNLSKFSTFTKDVSSKTATYVKYRNPNFSESPSLDELLRN
DADEANRKPDVVEVEVTQKRESTTVVNGQLKKQVTKDNFIKFLKAKVAIL
EEDHAQHAGELIRQKEQLEHALEAQRKSEHQRDQAINSNKHLSEQLMRSE
RQCEGFNQRQKEQQLEFITQQRELEVLKRDAKVSRQTNINLENRLSRVQE
DADAARQELKLLREEQRDQLEAHRKELKLRDSRIRALKRQRGDLLNAYKK
QLYMIDNLKRQTICLEQSAAIGFGEKEFNKVLDWNAKTASFLDH

BO28326.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4681-PA 388 CG4681-PA 1..388 1..388 1947 100 Plus