BO28331.complete Sequence
1000 bp assembled on 2011-06-29
GenBank Submission: KX794703
> BO28331.complete
GAAGTTATCAGTCGACATGGTGAATATATCCACCATAAACTGGGTCTTCG
TCTGCGGCCTGTCCTTTTGCCTGGGCGGGATTGCGGTGCTCAGTCTCATG
CCATTGGGATCAGACTGCGTGTGCCCGCTGTCCAATCCGCTGGCCAAGCT
TGCCGGTGGCGGAGAAGGAGTATCCGTGATTAAGAAAGAGCCAGCCGATG
AGAAGCAGCCACAGCCACATGACCACGGTGCGTCCGTACACAAGATGGCA
CTGCTGGTGCCGTTTCGAGACCGATTTGAGGAACTCCTCCAGTTCGTCCC
CCACATGACCGCCTTTTTGAAGCGGCAGGGCGTGGCGCACCACATCTTTG
TGCTGAACCAGGTGGACAGGTTCCGCTTCAATCGCGCCTCTCTCATCAAC
GTGGGTTTCCAGTTTGCCAGCGATGTGTACGATTACATTGCCATGCACGA
CGTAGACTTGCTGCCCTTGAATGACAATCTGCTCTATGAGTATCCCAGCA
GCTTGGGACCACTGCACATCGCCGGACCGAAGCTACATCCCAAATACCAC
TATGATAACTTCGTTGGAGGAATATTACTGGTGCGACGCGAGCACTTTAA
GCAGATGAACGGCATGTCGAACCAGTACTGGGGCTGGGGATTAGAGGACG
ACGAGTTCTTCGTGCGCATCCGGGATGCAGGACTGCAGGTGACGCGGCCG
CAGAACATTAAGACTGGCACTAATGATACATTCAGCCATATTCACAACCG
CTATCATCGTAAGCGGGACACCCAGAAGTGCTTCAACCAGAAGGAGATGA
CCCGCAAGCGGGACCACAAGACGGGCCTGGACAACGTGAAGTACAAAATA
CTTAAGGTGCATGAGATGCTCATTGACCAGGTGCCGGTGACCATCCTCAA
CATTTTGCTCGATTGTGATGTTAATAAAACGCCTTGGTGCGACTGCTCCG
GAACGGCAGCGGCTGCATCGGCGGTACAAACCGCAAGCTTTCTAGACCAT
BO28331.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta4GalT7-RA | 969 | CG11780-PA | 1..966 | 17..982 | 4815 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta4GalT7-RA | 1099 | CG11780-RA | 115..1080 | 17..982 | 4815 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:33:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25023526..25024149 | 112..735 | 3105 | 99.8 | Plus |
| 3R | 32079331 | 3R | 25024213..25024463 | 732..982 | 1255 | 100 | Plus |
| 3R | 32079331 | 3R | 25023370..25023466 | 17..113 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:33:17 has no hits.
BO28331.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-29 12:27:14 Download gff for
BO28331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalT7-RA | 98..1063 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:50 Download gff for
BO28331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalT7-RA | 115..1080 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:54 Download gff for
BO28331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalT7-RA | 115..1080 | 17..984 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:54 Download gff for
BO28331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25023370..25023466 | 17..113 | 100 | -> | Plus |
| 3R | 25023528..25024149 | 114..735 | 99 | -> | Plus |
| 3R | 25024217..25024463 | 736..984 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:50 Download gff for
BO28331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20849092..20849188 | 17..113 | 100 | -> | Plus |
| arm_3R | 20849250..20849871 | 114..735 | 99 | -> | Plus |
| arm_3R | 20849939..20850185 | 736..984 | 99 | | Plus |
BO28331.pep Sequence
Translation from 16 to 1000
> BO28331.pep
MVNISTINWVFVCGLSFCLGGIAVLSLMPLGSDCVCPLSNPLAKLAGGGE
GVSVIKKEPADEKQPQPHDHGASVHKMALLVPFRDRFEELLQFVPHMTAF
LKRQGVAHHIFVLNQVDRFRFNRASLINVGFQFASDVYDYIAMHDVDLLP
LNDNLLYEYPSSLGPLHIAGPKLHPKYHYDNFVGGILLVRREHFKQMNGM
SNQYWGWGLEDDEFFVRIRDAGLQVTRPQNIKTGTNDTFSHIHNRYHRKR
DTQKCFNQKEMTRKRDHKTGLDNVKYKILKVHEMLIDQVPVTILNILLDC
DVNKTPWCDCSGTAAAASAVQTASFLDH
BO28331.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta4GalT7-PA | 322 | CG11780-PA | 1..322 | 1..322 | 1735 | 100 | Plus |
| beta4GalNAcTA-PA | 403 | CG8536-PA | 153..385 | 50..283 | 329 | 32 | Plus |
| beta4GalNAcTB-PA | 323 | CG14517-PA | 109..262 | 75..227 | 273 | 35.9 | Plus |
