Clone BO28332 Report

Search the DGRC for BO28332

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:283
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG31875-RA
Protein status:BO28332.pep: Imported from assembly
Sequenced Size:517

Clone Sequence Records

BO28332.complete Sequence

517 bp assembled on 2011-06-27

GenBank Submission: KX794193

> BO28332.complete
GAAGTTATCAGTCGACATGTCGGCACGCAAGGAGAAACGAGACATACATT
ACTGGCGAAAACAGGCAGCCACCTTGCCGGATTTTGTGCCGCCGTGGAAG
CGGGAACAGGATTTGCAGCAGCTGCAACATCGAGCCTCGATCCTGTGGTC
GCCGCAACTGCAGGACCAAGATGACAAGGCTGTTCGCGAATACCTTGACT
ATGCGGCCAGTCTCTATGATATCGAGGAGGAGCAGGCGCTGTTCATCCTG
CGGCGTCACGGATACGACCTGCCCCTGGCACATCGACGTCTGGAGAAGAC
TGAGACAGCTCGAGGATGTCGCTACCATCGCTGGAAGGCCGAGGATCTCA
TCCGTCTTACCAAGGCCTTCGAGCAATACGGCACCGACTTCGCAAAGGTA
CGAAAGGAGCTACCCCACTTTCCCCTGGCCGAGCTTCGGCTGTACTTCTC
CTTCATGTCCTCGGCGTTGGAGACAGATGACCAACAGGCCATCCATAGAG
CAAGCTTTCTAGACCAT

BO28332.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31875-RD 486 CG31875-PD 1..483 17..499 2385 99.6 Plus
CG31875-RC 486 CG31875-PC 1..483 17..499 2385 99.6 Plus
CG31875-RB 486 CG31875-PB 1..483 17..499 2385 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31875-RB 1179 CG31875-RB 244..731 12..499 2395 99.4 Plus
CG31875-RD 1241 CG31875-RD 311..793 17..499 2385 99.6 Plus
CG31875-RC 1363 CG31875-RC 433..915 17..499 2385 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9996009..9996491 499..17 2385 99.6 Minus
Blast to na_te.dros performed 2014-11-26 15:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker4 7359 Stalker4 STALKER4 7359bp 854..962 299..405 108 60.7 Plus

BO28332.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:25:03 Download gff for BO28332.complete
Subject Subject Range Query Range Percent Splice Strand
CG31875-RB 146..628 17..501 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:06 Download gff for BO28332.complete
Subject Subject Range Query Range Percent Splice Strand
CG31875-RB 249..731 17..501 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:04 Download gff for BO28332.complete
Subject Subject Range Query Range Percent Splice Strand
CG31875-RB 249..731 17..501 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:04 Download gff for BO28332.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9996006..9996491 17..501 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:06 Download gff for BO28332.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9996006..9996491 17..501 99   Minus

BO28332.pep Sequence

Translation from 16 to 517

> BO28332.pep
MSARKEKRDIHYWRKQAATLPDFVPPWKREQDLQQLQHRASILWSPQLQD
QDDKAVREYLDYAASLYDIEEEQALFILRRHGYDLPLAHRRLEKTETARG
CRYHRWKAEDLIRLTKAFEQYGTDFAKVRKELPHFPLAELRLYFSFMSSA
LETDDQQAIHRASFLDH

BO28332.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31875-PD 161 CG31875-PD 1..161 1..161 856 100 Plus
CG31875-PC 161 CG31875-PC 1..161 1..161 856 100 Plus
CG31875-PB 161 CG31875-PB 1..161 1..161 856 100 Plus
CG31875-PA 161 CG31875-PA 1..161 1..161 856 100 Plus