BO28335.complete Sequence
940 bp assembled on 2011-06-27
GenBank Submission: KX798259
> BO28335.complete
GAAGTTATCAGTCGACATGTCGCACCGCCACCAGGACATTCCCATCCGCC
CACGTTACGGTTATGTGGCCGAGGAGAGTGGCCCATCGGAAGGGGCAGCC
AGGAGTTCCGGATCCGGAGCCACGCCCGCCTCCTCCTACACGGAAATTCC
GTTCCTGGCTCAGTATCCGGGAGCGGTGCCAGAGCACGTGCTCCAGGATC
TGACGCCCACAGCCACTGGCCATGCTGCGATTCCCGGAAGCACAAAGACA
AGACCCAACGGCGAGAAATACCTTAACCTGGATTCGGGCGAGGATCCCGA
CGAGGAAGACGATCCCTTGGAGGAGGAGGACAACAGCAACTCGAATAGCA
ACTCCAAGGGCAGTTCCGGCGACATCGAGAGGCACAGACTGAAGGCAGAG
AGCACTGTGCCCTACGAGCTGGACGGCGAAACCAGTGACTCCGACGGGAT
GCGCCACTTTGTGGCCCACGATCTAGAGGCCAAGTTGCGCGAGCGCGTGG
CGGCTTCGGCCTACTCCTCGGAGCACACCACGCCCCTGAGCTCCATGGGT
CCCATTGGAGCCACTTCCGGCAACGGTCTGCTCACGCGGCGGTTCCTGCA
GTCGCGCAACATTCCCGAAGTGGACGGCAGCGTCTTGAGCGACATCGAAC
TGGAGGCTCAGTACTTGGCCAGCTCGGTGGACAATCTGATGGAGAACCTT
GGCAACCTGCTACACTCGATCTCTTCCATAACTGCCGACAACGTGGAGGT
CCACCGCAACGCGGTCAACAAGCTGACGGACACTTTGGACGCGAATATCA
AGTGCCAGTATCAATTGCTGGCCAAGGCGGAGGAAATCACCAAGTCGATG
AAACCCACAGAGCAGCTGGGTCAGCGCATAAGGCAGATCAAGCGGCTGGT
GGACATGTTGGACAGCACCATGGCAAGCTTTCTAGACCAT
BO28335.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17180-RB | 909 | CG17180-PB | 1..906 | 17..922 | 4365 | 98.8 | Plus |
CG17180-RA | 909 | CG17180-PA | 1..906 | 17..922 | 4365 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17180-RB | 1097 | CG17180-RB | 104..1009 | 17..922 | 4365 | 98.8 | Plus |
CG17180-RA | 1123 | CG17180-RA | 130..1035 | 17..922 | 4365 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 541485..541959 | 405..879 | 2255 | 98.3 | Plus |
3L | 28110227 | 3L | 541041..541428 | 17..404 | 1895 | 99.2 | Plus |
3L | 28110227 | 3L | 542012..542059 | 875..922 | 225 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:50:21 has no hits.
BO28335.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:59 Download gff for
BO28335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17180-RA | 130..1035 | 17..924 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:50 Download gff for
BO28335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17180-RA | 130..1035 | 17..924 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:52 Download gff for
BO28335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17180-RA | 130..1035 | 17..924 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:52 Download gff for
BO28335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 541041..541428 | 17..404 | 99 | -> | Plus |
3L | 541485..541959 | 405..879 | 98 | -> | Plus |
3L | 542017..542059 | 880..924 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:50 Download gff for
BO28335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 541041..541428 | 17..404 | 99 | -> | Plus |
arm_3L | 541485..541959 | 405..879 | 98 | -> | Plus |
arm_3L | 542017..542059 | 880..924 | 95 | | Plus |
BO28335.pep Sequence
Translation from 16 to 940
> BO28335.pep
MSHRHQDIPIRPRYGYVAEESGPSEGAARSSGSGATPASSYTEIPFLAQY
PGAVPEHVLQDLTPTATGHAAIPGSTKTRPNGEKYLNLDSGEDPDEEDDP
LEEEDNSNSNSNSKGSSGDIERHRLKAESTVPYELDGETSDSDGMRHFVA
HDLEAKLRERVAASAYSSEHTTPLSSMGPIGATSGNGLLTRRFLQSRNIP
EVDGSVLSDIELEAQYLASSVDNLMENLGNLLHSISSITADNVEVHRNAV
NKLTDTLDANIKCQYQLLAKAEEITKSMKPTEQLGQRIRQIKRLVDMLDS
TMASFLDH
BO28335.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17180-PB | 302 | CG17180-PB | 1..302 | 1..302 | 1542 | 100 | Plus |
CG17180-PA | 302 | CG17180-PA | 1..302 | 1..302 | 1542 | 100 | Plus |