Clone BO28335 Report

Search the DGRC for BO28335

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:283
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG17180-RA
Protein status:BO28335.pep: Imported from assembly
Sequenced Size:940

Clone Sequence Records

BO28335.complete Sequence

940 bp assembled on 2011-06-27

GenBank Submission: KX798259

> BO28335.complete
GAAGTTATCAGTCGACATGTCGCACCGCCACCAGGACATTCCCATCCGCC
CACGTTACGGTTATGTGGCCGAGGAGAGTGGCCCATCGGAAGGGGCAGCC
AGGAGTTCCGGATCCGGAGCCACGCCCGCCTCCTCCTACACGGAAATTCC
GTTCCTGGCTCAGTATCCGGGAGCGGTGCCAGAGCACGTGCTCCAGGATC
TGACGCCCACAGCCACTGGCCATGCTGCGATTCCCGGAAGCACAAAGACA
AGACCCAACGGCGAGAAATACCTTAACCTGGATTCGGGCGAGGATCCCGA
CGAGGAAGACGATCCCTTGGAGGAGGAGGACAACAGCAACTCGAATAGCA
ACTCCAAGGGCAGTTCCGGCGACATCGAGAGGCACAGACTGAAGGCAGAG
AGCACTGTGCCCTACGAGCTGGACGGCGAAACCAGTGACTCCGACGGGAT
GCGCCACTTTGTGGCCCACGATCTAGAGGCCAAGTTGCGCGAGCGCGTGG
CGGCTTCGGCCTACTCCTCGGAGCACACCACGCCCCTGAGCTCCATGGGT
CCCATTGGAGCCACTTCCGGCAACGGTCTGCTCACGCGGCGGTTCCTGCA
GTCGCGCAACATTCCCGAAGTGGACGGCAGCGTCTTGAGCGACATCGAAC
TGGAGGCTCAGTACTTGGCCAGCTCGGTGGACAATCTGATGGAGAACCTT
GGCAACCTGCTACACTCGATCTCTTCCATAACTGCCGACAACGTGGAGGT
CCACCGCAACGCGGTCAACAAGCTGACGGACACTTTGGACGCGAATATCA
AGTGCCAGTATCAATTGCTGGCCAAGGCGGAGGAAATCACCAAGTCGATG
AAACCCACAGAGCAGCTGGGTCAGCGCATAAGGCAGATCAAGCGGCTGGT
GGACATGTTGGACAGCACCATGGCAAGCTTTCTAGACCAT

BO28335.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17180-RB 909 CG17180-PB 1..906 17..922 4365 98.8 Plus
CG17180-RA 909 CG17180-PA 1..906 17..922 4365 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17180-RB 1097 CG17180-RB 104..1009 17..922 4365 98.8 Plus
CG17180-RA 1123 CG17180-RA 130..1035 17..922 4365 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 541485..541959 405..879 2255 98.3 Plus
3L 28110227 3L 541041..541428 17..404 1895 99.2 Plus
3L 28110227 3L 542012..542059 875..922 225 97.9 Plus
Blast to na_te.dros performed on 2014-11-26 15:50:21 has no hits.

BO28335.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:59 Download gff for BO28335.complete
Subject Subject Range Query Range Percent Splice Strand
CG17180-RA 130..1035 17..924 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:50 Download gff for BO28335.complete
Subject Subject Range Query Range Percent Splice Strand
CG17180-RA 130..1035 17..924 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:52 Download gff for BO28335.complete
Subject Subject Range Query Range Percent Splice Strand
CG17180-RA 130..1035 17..924 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:52 Download gff for BO28335.complete
Subject Subject Range Query Range Percent Splice Strand
3L 541041..541428 17..404 99 -> Plus
3L 541485..541959 405..879 98 -> Plus
3L 542017..542059 880..924 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:50 Download gff for BO28335.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 541041..541428 17..404 99 -> Plus
arm_3L 541485..541959 405..879 98 -> Plus
arm_3L 542017..542059 880..924 95   Plus

BO28335.pep Sequence

Translation from 16 to 940

> BO28335.pep
MSHRHQDIPIRPRYGYVAEESGPSEGAARSSGSGATPASSYTEIPFLAQY
PGAVPEHVLQDLTPTATGHAAIPGSTKTRPNGEKYLNLDSGEDPDEEDDP
LEEEDNSNSNSNSKGSSGDIERHRLKAESTVPYELDGETSDSDGMRHFVA
HDLEAKLRERVAASAYSSEHTTPLSSMGPIGATSGNGLLTRRFLQSRNIP
EVDGSVLSDIELEAQYLASSVDNLMENLGNLLHSISSITADNVEVHRNAV
NKLTDTLDANIKCQYQLLAKAEEITKSMKPTEQLGQRIRQIKRLVDMLDS
TMASFLDH

BO28335.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17180-PB 302 CG17180-PB 1..302 1..302 1542 100 Plus
CG17180-PA 302 CG17180-PA 1..302 1..302 1542 100 Plus