Clone BO28338 Report

Search the DGRC for BO28338

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:283
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG10748-RA
Protein status:BO28338.pep: Imported from assembly
Sequenced Size:1081

Clone Sequence Records

BO28338.complete Sequence

1081 bp assembled on 2011-06-27

GenBank Submission: KX797123

> BO28338.complete
GAAGTTATCAGTCGACATGTTGTTACTGACAAGTCTTAAAAGCCTGGCAA
AACCAGCTACATGGGGAGTTGTGGTCCGCACTTTAAAGGTCGCCGTTGTC
GGTGCCGGAGGAGGAATTGGACAACCGCTATCGCTTCTGCTCCGTCGCTG
TCCTGGAATCGATGAGCTGGCTCTACATGATCTCAGCGAAATGAAGGGAA
TTGCTACGGATCTATCCCATATAAGCCAAACGGGAAAGGTGATAGGTTTT
ACCGGTGAAAAGGAACTGGAGTCGGCGGTGAGTGGAGCTGATGTGGTGGT
TGTGGCGGCAGGAATGCCACGTCTGCCAGGAATGCAAAGGGATCACCTGA
TGGCCGCCAATGGAAATGTTGCAGTGAAAGTTGCCACTGCCATTAGCAAT
GCCTCTCCACGAGCTCATCTTGCCTTTATTACCAATCCGGTCAATATGAT
TGTGCCCGCCGCAGCTGAGGTTCTTATGGCCCATGGAACTTTTGATTCTC
GTCGGCTCTTCGGTATTACGACTTTGGATGTGGTGCGATCGAAAAAGTTC
ATTGGTGATTCTATGAACATATCACCGGATGACGTAAACATTCCAGTTAT
TGGTGGCCATGCGGGGATTACAATTCTACCGCTCATTTCGCAGTGTCAGC
CGATATATAGATGTGATCTCCAGGAGATCCAGAATCTAACTCATCGCATT
CAGGAGGCGGGCACAGAGGTGGTGAATGCCAAAGCTGGAAAAGGATCTGC
CACCCTATCGATGGCTTATGCTGGCGCAACTTTCGTGAACTCCCTGCTGC
GTGGAATTGCTGGACAGGATGGTCTAATCGAGTGCGCTTTTGTCGCCTCC
AAACTAACCGACGCCCCATTCTTTGCTAGTCCATTGGAATTGGGAAAGGA
TGGTATCAAGCGCTATATACCACTTCCCCAGATGAGTGACTACGAAAAGG
AGGCTTTGGAAAAGCTGCTACCTATTCTACGACAGAATGCTGATGAGGGT
GTCAATTTTGCAAAAATGATTTTGAGTGGACAATCACATTCTCCCATTCC
AGCGGCCTTGCCGGCAAGCTTTCTAGACCAT

BO28338.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10748-RA 1050 CG10748-PA 1..1047 17..1063 5205 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10748-RA 1146 CG10748-RA 29..1075 17..1063 5205 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12971285..12972331 1063..17 5205 99.8 Minus
Blast to na_te.dros performed on 2014-11-26 15:51:31 has no hits.

BO28338.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:25:03 Download gff for BO28338.complete
Subject Subject Range Query Range Percent Splice Strand
CG10748-RA 34..1075 22..1065 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:16 Download gff for BO28338.complete
Subject Subject Range Query Range Percent Splice Strand
CG10748-RA 34..1075 22..1065 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:14 Download gff for BO28338.complete
Subject Subject Range Query Range Percent Splice Strand
CG10748-RA 34..1075 22..1065 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:14 Download gff for BO28338.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12971283..12972326 22..1065 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:16 Download gff for BO28338.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12964383..12965426 22..1065 99   Minus

BO28338.pep Sequence

Translation from 16 to 1081

> BO28338.pep
MLLLTSLKSLAKPATWGVVVRTLKVAVVGAGGGIGQPLSLLLRRCPGIDE
LALHDLSEMKGIATDLSHISQTGKVIGFTGEKELESAVSGADVVVVAAGM
PRLPGMQRDHLMAANGNVAVKVATAISNASPRAHLAFITNPVNMIVPAAA
EVLMAHGTFDSRRLFGITTLDVVRSKKFIGDSMNISPDDVNIPVIGGHAG
ITILPLISQCQPIYRCDLQEIQNLTHRIQEAGTEVVNAKAGKGSATLSMA
YAGATFVNSLLRGIAGQDGLIECAFVASKLTDAPFFASPLELGKDGIKRY
IPLPQMSDYEKEALEKLLPILRQNADEGVNFAKMILSGQSHSPIPAALPA
SFLDH

BO28338.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10748-PA 349 CG10748-PA 1..349 1..349 1753 100 Plus
Mdh2-PA 336 CG7998-PA 26..334 24..332 856 52.4 Plus
CG10749-PA 347 CG10749-PA 22..340 17..333 831 52 Plus