BO28339.complete Sequence
1171 bp assembled on 2011-06-27
GenBank Submission: KX797354
> BO28339.complete
GAAGTTATCAGTCGCCATGTCGCAGCTGAACGCGGAGACCCAGCAGAGGC
ACTTCATCACGCGCAGCAGTTATGAGGGCGCCTGGGATAGATTGGTGAAT
GTGATGGACGGATTTGGGAGCTACCGCTATCCGGATGGGAGCGAGTATCG
AGGAAGGTTCCATCAGGGTCAGTTCCACGGCTATGGCCATTTGCGACTCG
CCCAGCCGTACCGCTTTACGGTTAAGGGTGAGTTCGAGCATGGTCGCCTG
GTGACAGTGGAGGACATGTGGTTTTCCGACGGTCTGCATGTGGATGGCAG
ATTTAATGGCATGGTCTTGCAGTGCGATGAATGGGATTACCTGACGCCGA
AGGATCGGCGTTATCATGCCGAGCGTCGTTATGGCCAACAGCCGGTTGGC
CCCACTGCCTTTCTTACATCCAAAATGCAACCCAGAAATATTCCCGAACA
TTGCTATGATGTGGAGGAGGGTCTGTTCAATAGTAAGACCTGTTGGTTGA
CGGACCGTCCGAGTCCGCTCCATCAATTCATGTACGTGAGCTGCCCGCAA
GATAAGGATTGGATTAAGAAGAATTGCAGGAAGGCTAGAACATCGCGTAT
AATTGAGCCACCATCCGACTTCTGTCGCCGCATTATAGCCAACAATTTGG
CAACGGAACGAGCCCAGTTGCGAAGCACGGCCATATATGCACCCAATGGA
CAAGTGGATCGGGAGCGATACTTCCACAAGTTGACCAAGAAACGTGGACA
GCCGAATGAGCCGCTGGAGAACATTCCAAGGCGTCCCATGCCCGTCGACG
ATCCCGCCTGGGAGACGGAGATGTGTGTGCGTGCCTATGCCGGGATGTTG
GATAAACAGCAGAAGGATCAAATGGAGTTTAAGCGCGTGCATCCTTGCGC
CAAAATGGAGACGGTGAAGAGACCACGCCGATGGTCGAGCACCTCAGATG
TACGCAATCCGCAGTCGGGTGGACCCTCCAGCTGCCAGACGGACAGCTTT
GGCGAGGATGAACTGGTCCTAAACTTTGAGGAATCATACCGCTCGGCCAA
CAACATGATGAGGAAACGGACGGCGGATAACATAAATGTGGTGCAATCTA
ATCTAATACGCCGCAATAGCTACATGGACATGACCCGGTCCATATTCGAG
TTGGCAAGCTTTCTAGACCAT
BO28339.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3222-RA | 1140 | CG3222-PA | 1..1137 | 17..1153 | 5535 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3222-RA | 1354 | CG3222-RA | 86..1222 | 17..1153 | 5535 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9599073..9600209 | 17..1153 | 5535 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:51:41 has no hits.
BO28339.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:25:04 Download gff for
BO28339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3222-RA | 86..1222 | 17..1155 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:20 Download gff for
BO28339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3222-RA | 86..1222 | 17..1155 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:18 Download gff for
BO28339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3222-RA | 86..1222 | 17..1155 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:18 Download gff for
BO28339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9599073..9600209 | 17..1155 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:20 Download gff for
BO28339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9592173..9593309 | 17..1155 | 98 | | Plus |
BO28339.pep Sequence
Translation from 16 to 1171
> BO28339.pep
MSQLNAETQQRHFITRSSYEGAWDRLVNVMDGFGSYRYPDGSEYRGRFHQ
GQFHGYGHLRLAQPYRFTVKGEFEHGRLVTVEDMWFSDGLHVDGRFNGMV
LQCDEWDYLTPKDRRYHAERRYGQQPVGPTAFLTSKMQPRNIPEHCYDVE
EGLFNSKTCWLTDRPSPLHQFMYVSCPQDKDWIKKNCRKARTSRIIEPPS
DFCRRIIANNLATERAQLRSTAIYAPNGQVDRERYFHKLTKKRGQPNEPL
ENIPRRPMPVDDPAWETEMCVRAYAGMLDKQQKDQMEFKRVHPCAKMETV
KRPRRWSSTSDVRNPQSGGPSSCQTDSFGEDELVLNFEESYRSANNMMRK
RTADNINVVQSNLIRRNSYMDMTRSIFELASFLDH
BO28339.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:45:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3222-PA | 379 | CG3222-PA | 1..379 | 1..379 | 2072 | 100 | Plus |
| CG3306-PA | 288 | CG3306-PA | 12..216 | 8..210 | 245 | 30.8 | Plus |
