Clone BO28344 Report

Search the DGRC for BO28344

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:283
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptAPP-BP1-RA
Protein status:BO28344.pep: Imported from assembly
Sequenced Size:1606

Clone Sequence Records

BO28344.complete Sequence

1606 bp assembled on 2011-06-27

GenBank Submission: KX800049

> BO28344.complete
GAAGTTATCAGTCGACATGTCCTCGCCAGCCCCCAAATCGCCGGAGCTTT
CGGATAAAAGCAAGAAATACGACAGACAAATCAGGCTGTGGGGAGAGCAT
GGACAGACGCTATTGGAGGCAGCCACAGTATGTTTGGTGAATGTTACGGC
CGTCGGCTGTGAAACTGCCAAGGGACTGGTGCTACCCGGTATCGGAGGCT
TCACTGTGGCCGATGGCAGCACCGTCAAGGAGGAGGATCTGGGCAACAAT
TTCTTCCTCGATTCCAGCTATCTGGGCAAATCTAAAGCATTGGCTTGCAT
GCAACTTCTCCAGGAACTCAATCCCGACGTAAATGGCGATTATGTCGACG
AGAGTGCCGACTTTTTGTTAGCCAACAGACCGAACTTCTTCGACAGCTTC
GATTTAGTGATTGCCTCCAATCTCAATGAGCAGACTTTGCTTCTCTTGGC
CGAACGGTTATGGGAGCTTAACGTTCCATTAATCTACTGCCGATCGCTTG
GCATGCTGGGCACAATACGCTTGCAAATACGGGAACACTGCATCGTGGAG
GCGCATCCGGATAATCGACAGTTTGATCTGCGTCTGGAGCATCCATTCGA
TGCTTTGCGGGAGCATCTCGACGGCACCGAGGTGACCAGTAAGGTGCCCT
GGCTGCTGGTGCTTCACAAATATCTTAATGTGTGGCAAAAACAACAAGCG
GATGGGACTCAAACGCCTCGAAATTACAAAGAGAAGAATCAGTTGAAGGA
GACCATTAGAGAGGAGATGAAGGCGGATGAGGAAAACTATGAAGAGGCCA
TCAAGGCGGTCAATACAGCCTTTGGAGCGGGACAGGTTCCCAAAAGCCTG
AAAGCCATATTCGAAGATGATGCCTGCGAACAGTTAAACAAGAAGAGCAA
CGTCTTTTGGATCATGGCCAAGGCCCTAAAGCACTTTGTGATACATGAGA
ATGAGGGCCATCTCCCTCTGCCTGGCGTTCTGCCGGACATGACTGCCAAT
ACGGACTCCTATATCGCCCTGCAGCACATCTACCGCCAACAGGCGCTGCA
AGACGCCGACCAGGTGTATCACAAGTGCCAGGAGTACCTTAAGCAGTTGG
CTTTGCCTGCCGACAGCATTGATGAGAGAAGTGTGCGTCTCATTTGCAAA
GAAGCAGCCGGACTGGCGGTCATAAGGGGTACACGCATTGCAGAGGAGTA
CGAGAAGAGCAGTCGCCTGCTACCACTGGTTGAGGACAACGAGCTGCAGG
GCAACCTCACGGCATACAACTTTGCGCTGCGCGCCTACGAGCGCTTCCTC
AGCGAGTGTGGCAACATTCCCGGCGAGTGCATCGTTGAGCAGGACATTGG
ACGTCTGAAGAGCATTGCCGCCAAGATGCTAAGCGATTTGGGCATGCACG
CCACCATCAGCGATGATGTTCTGCACGAGATTTGTCGATATGGCGGAGCT
GAGTTGCATGCAGTGTCTGCTTTTATTGGTGGCTGCGCTGCCCAGGAGGT
GATCAAGATCATTACGAAGCAATACAAGCCAATCGATAATACTTTTATAT
ACAATGCTATAACCACAGAAAGTGTCACATTGAAGCTAGCAAGCTTTCTA
GACCAT

BO28344.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
APP-BP1-RA 1575 CG7828-PA 1..1572 17..1588 7740 99.5 Plus
APP-BP1-RB 1575 CG7828-PB 1..1572 17..1588 7740 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
APP-BP1-RA 1867 CG7828-RA 274..1845 17..1588 7740 99.5 Plus
APP-BP1-RB 1650 CG7828-RB 57..1628 17..1588 7740 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11099031..11099676 250..895 3155 99.2 Plus
3L 28110227 3L 11099741..11100076 894..1229 1680 100 Plus
3L 28110227 3L 11100138..11100389 1229..1480 1230 99.2 Plus
3L 28110227 3L 11098808..11098974 83..249 835 100 Plus
3L 28110227 3L 11100446..11100556 1478..1588 555 100 Plus
3L 28110227 3L 11098685..11098753 17..85 330 98.6 Plus
Blast to na_te.dros performed on 2014-11-26 15:52:03 has no hits.

BO28344.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:25:05 Download gff for BO28344.complete
Subject Subject Range Query Range Percent Splice Strand
APP-BP1-RA 274..1845 17..1590 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:29 Download gff for BO28344.complete
Subject Subject Range Query Range Percent Splice Strand
APP-BP1-RB 57..1628 17..1590 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:25 Download gff for BO28344.complete
Subject Subject Range Query Range Percent Splice Strand
APP-BP1-RB 57..1628 17..1590 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:25 Download gff for BO28344.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11098685..11098752 17..84 98 -> Plus
3L 11098810..11098974 85..249 100 -> Plus
3L 11099031..11099676 250..895 99 -> Plus
3L 11099743..11100076 896..1229 100 -> Plus
3L 11100139..11100387 1230..1478 99 -> Plus
3L 11100447..11100556 1479..1590 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:29 Download gff for BO28344.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11091785..11091852 17..84 98 -> Plus
arm_3L 11091910..11092074 85..249 100 -> Plus
arm_3L 11092131..11092776 250..895 99 -> Plus
arm_3L 11092843..11093176 896..1229 100 -> Plus
arm_3L 11093239..11093487 1230..1478 99 -> Plus
arm_3L 11093547..11093656 1479..1590 98   Plus

BO28344.pep Sequence

Translation from 16 to 1606

> BO28344.pep
MSSPAPKSPELSDKSKKYDRQIRLWGEHGQTLLEAATVCLVNVTAVGCET
AKGLVLPGIGGFTVADGSTVKEEDLGNNFFLDSSYLGKSKALACMQLLQE
LNPDVNGDYVDESADFLLANRPNFFDSFDLVIASNLNEQTLLLLAERLWE
LNVPLIYCRSLGMLGTIRLQIREHCIVEAHPDNRQFDLRLEHPFDALREH
LDGTEVTSKVPWLLVLHKYLNVWQKQQADGTQTPRNYKEKNQLKETIREE
MKADEENYEEAIKAVNTAFGAGQVPKSLKAIFEDDACEQLNKKSNVFWIM
AKALKHFVIHENEGHLPLPGVLPDMTANTDSYIALQHIYRQQALQDADQV
YHKCQEYLKQLALPADSIDERSVRLICKEAAGLAVIRGTRIAEEYEKSSR
LLPLVEDNELQGNLTAYNFALRAYERFLSECGNIPGECIVEQDIGRLKSI
AAKMLSDLGMHATISDDVLHEICRYGGAELHAVSAFIGGCAAQEVIKIIT
KQYKPIDNTFIYNAITTESVTLKLASFLDH

BO28344.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
APP-BP1-PA 524 CG7828-PA 1..524 1..524 2718 100 Plus
APP-BP1-PB 524 CG7828-PB 1..524 1..524 2718 100 Plus
Aos1-PA 337 CG12276-PA 18..179 14..178 188 29.9 Plus