BO28347.complete Sequence
3490 bp assembled on 2011-07-18
GenBank Submission: KX794149
> BO28347.complete
GAAGTTATCAGTCGACATGTCCAAACACAATACACGACTCGATAGGCATG
TTAAGTTTAGGATTCTTCAGGAGGACAGGTTACAATCACCGAGACAAAAA
GAGGATAATATCAAACGGAAAAAGAGCACTTCCAAATCTGAAAATCTTAC
TGAACGTGGCCTATCATCTTGTCTGATCAACAGCTCGGTAGATCTGCGGA
TCACAGGAGGTGAGAATGACCCAGCACAGCGCAATGTTGGAAAATTGCCT
CGCACCGACAGCGAGTGTCAGTTCAAAGCTCCGGGATACCGATTTCTTAC
CGAACAAGATACTACAGTGAACACCCATGAGGTCAAGATGAGCCCCAGGG
TAGTGACGAAAAAGGATTTAAGGCACAAATGTGATTTCTTTGCTAAGAAC
AAGGACGCACGACCGTTTAAGAATAAGATCACGCAGACGCTTTACAGAGA
ATCCTCTGCGCAGACAATGGCTTATTTGCCGGAGATTTTTGAAGCAAACA
GCGTTGAAACCTTGGAACTGTTTTCCCTGCCATCTATATTCCCAGTAGCA
AATCGACCGGGACTCCATGAAGTTGAGATTCTGGAACGCGCCAGGAAACG
ATGGGCCTTTAGTGATGCCCTAAAGATTCACTTCAAAAACCTACTTCAAG
ACGCCAGGAAAGTGGCGATAAAAACAGAGCTCAAGGAGATTTTGGAGGCC
ATTGAATGGGAGCAGTGGATACAGCGTGAGGAGGACATTCAAGAGTGCCA
GATGATGCGTCTCCAGATCGTGATTAAAATGTTTGATAAGCGGGAGAAGG
AGATGCACACCGCTTCAAAGACTCGAATCGAAACAGCCTGCGAGCGAATC
GAGAAGCGACGTCAGGCGGGTTTGCGAAAAAACGAGATCGAGTTCCAACG
GGGAATGCGCCGAATGGAGTTCCAACTTACGAAGAATCCGCGAAGGTGGG
AGAAGCAAAGTCCCATGTACGCGTTGGGATCACCCAGCTCGGAGTTCTAC
GCTCCGCTTTTAAGATACGGCGTGGATCCGGCGCGTCGCAACTTTGTGTC
CAAAACAGCACAAAAAGCCTTCGATATGAGAATCGATGACTTAGAGAAGC
GAATCAACAATACCGACTTCAAATGTCCGTTTAGAAAGCTTAAGGATTGG
TCCAAGCCCAAAAAGTATGACAAGGAATATGAGCGGAACTTCTGCAAGGA
AGACAATCTACAAAAGCTCTTCGAATCTCTGAAAGGCCTAAGAACACAGG
CCAATGCGGAGAGAGAAGAACCAAAATGTCTAGTACGGCGAAGAAAACCC
GAATTGGGTAGAGCGGCATCCCAAATAACCCTGGCCTATCTAACTGACTT
GTACGAAAGGAGCGATTCTGATGAGGAATATCGTAAATCGCGAGCTTACG
GATCCTTTTCACCACACGCAAAGCCGGGGACGAACAAAGTCTCAGAGACC
ACACTATCGCATTTGAAGAACGACAGGAAGCGCGAAGAAATGGAGCACAT
GTTGAACATTTATGAGGGCACCTACGTGGGTTGGGTGATGCAGTTCCTCT
CGGAGGAGATGACCCGACTTTCGGAGCTGCGAAGGCTTCACTTCTTCTCG
ATTATGGCCCAAAAGGAACGCTGGAGACGCGAGGCCGCCGAAGCCGGTCT
GCGACAGAAGGAGAACGAATTGAGATTGTTGTACGAGGAGCTTTTCCAAC
ATTGCAATGTGGTCAACAATGAGATCTCCAATAAGTATTTTGCCAACATT
CTGAGCTCTGATATGTACGGCATGGCCGATGGCCTTGCTGGCGAGACAGT
GAGTGAATTGGCCAAAAAGATCGATGCGGATATATTGCGATGGCTAGAGA
GCTTTAAGTTGATCCAAAACCCCCTTACCTATGTGCCACTACGAATAATG
TTGAATGACATGATTTCACCGAATATGAACAATATTCTGCAGCGCTACGA
GAATTCCCTGATCGCCCAGTACGTATTGGAGGATGTGATTTTCCCAAAGG
TGTGGAATGAACTAGATCCGTTTGATATAGGATGTACTTTAACGAGTGAT
CTCATAGATCGCCTAATCGACAACGATTTGTATCTGATGTCCACTGACAG
CGAAAGTGAAACCCCACAAAAAACTTCCTGGCGCGAAGCTCATGCCATCA
TAAGAAAGATCATACGACAGGCAGTTCCTGGCGATCGTTGGCTTCAAGAA
AATGAGCGTATTGTTAACGAAAACTATAATGATCTATTTGACGACGTGTT
CGCAGGCATATTTGACAAGTCTGAAAATCCTCCAGCCGTGAGGCCATCAC
AACTAATCGAGCTCTGCCCTACTGTCTCTCATAATTACATTCATCACATG
GACAATATACGCGAGATGGAAAACTTTCATACCGAAAATGCTACCTCACA
GCCAGGATCAGAATTTGAAAAAAAACAGTTGTTAAACATATTAAGAAAAC
GCAAAGAAGACAATATTACAAGAAATTTACAAAACTTTGATAATCCCCTG
GCGGGTGAAATACCATCTGACAGCGACATATTTCTAAGATCTCAAATATT
CAATCCAATGCCACTTCCAACGACGACACCAAGTGATTTGTTCAGTCTTA
GAAGCACTCTCGATGTTTCGCATGCCTCAAAATTGGGATCATTTGTCGGC
AGGGGCTATAGAGTAATGCTTCCCAGTGAGGAAGAAAAAAATTCTAACGT
TGATGTATCAAAACTTCCGATAGATAATGACGAGGAAGAAAAATTTGAAT
TGCCAGCTTCAGAGTTTTCTGAAATTACAGGGACTGATATAGACTCGCCG
AAGGTATCATTTCATAAAATTCTGTCGACAATGGAATTGAGGACGAGGAT
TTCATCAGCATCTGAATCGCACGATAAGCAACCAGAAGAAGAGAATTTAA
AACCACTGGATTCATCTCCATTAAAATTAGAAAGCTTAACCACCCCATCT
CCTGGTGAAGCGAAAACTAGAGACTCCCCTTCAGTTGAATTAAAGCCGGT
TACTGAATTAGTTTCTGAGAATGTAATACCCACCACTTCCTTGGGTACTA
GTAGTATAATAACCAACGATACAAACACAACAACAAACGATTTAGACCAA
GAAAAGGAAACGTCTAGGGAAATGCGCTCGGTAGTCGAGTTCAATCTTGA
GCCTCTAAACAGACCGGAAGCCGAACTCGGACTGGATGCCGAACTCGGAC
CGGATCTCGAAGACGAACCGGGATCCGAACTTTTGCTCTGGCCAGAACGG
GAGTCCTTTATCCCACCCGTACGTTCGTCGGGGGTCAGAAATTCAACAGT
CGAACCGATTAAATCTGAGAAAGGATCGCATTCTTCTAAAAGGCCTAGAA
ATAAATCCATAACCGATCAATATGAAGTTGAGGAAAGATATATTGGCTCC
GTGAGCAAGAACCATATCCAAATTAAGGACAAAACCGCTGAGAACATAGA
TAATATTGTACCAGAATCTGAAGCAAGCTTTCTAGACCAT
BO28347.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:41:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15143-RA | 3459 | CG15143-PA | 1..3456 | 17..3472 | 17280 | 100 | Plus |
| CG15144-RB | 3117 | CG15144-PB | 729..1391 | 556..1218 | 615 | 72.9 | Plus |
| CG15145-RA | 2631 | CG15145-PA | 718..926 | 704..912 | 340 | 77.5 | Plus |
| CG15144-RB | 3117 | CG15144-PB | 2071..2342 | 1907..2178 | 250 | 72.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:41:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15143-RA | 3513 | CG15143-RA | 29..3484 | 17..3472 | 17280 | 100 | Plus |
| CG15144-RB | 3362 | CG15144-RB | 856..1518 | 556..1218 | 615 | 72.9 | Plus |
| CG15145-RA | 2787 | CG15145-RA | 718..926 | 704..912 | 340 | 77.5 | Plus |
| CG15144-RB | 3362 | CG15144-RB | 2198..2469 | 1907..2178 | 250 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:41:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17520921..17523947 | 3472..446 | 15135 | 100 | Minus |
| 2L | 23513712 | 2L | 17524007..17524246 | 447..208 | 1200 | 100 | Minus |
| 2L | 23513712 | 2L | 17524327..17524521 | 211..17 | 975 | 100 | Minus |
| 2L | 23513712 | 2L | 17527429..17528091 | 1218..556 | 615 | 72.9 | Minus |
| 2L | 23513712 | 2L | 17531172..17531380 | 912..704 | 340 | 77.5 | Minus |
| 2L | 23513712 | 2L | 17529852..17530249 | 2235..1838 | 310 | 71.9 | Minus |
| 2L | 23513712 | 2L | 17526478..17526749 | 2178..1907 | 250 | 72.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:41:22 has no hits.
BO28347.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-18 15:33:50 Download gff for
BO28347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15143-RA | 29..3484 | 17..3474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:47 Download gff for
BO28347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15143-RA | 29..3484 | 17..3474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:40 Download gff for
BO28347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15143-RA | 29..3484 | 17..3474 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:40 Download gff for
BO28347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17520919..17523945 | 448..3474 | 99 | <- | Minus |
| 2L | 17524007..17524244 | 210..447 | 100 | <- | Minus |
| 2L | 17524329..17524521 | 17..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:47 Download gff for
BO28347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17520919..17523945 | 448..3474 | 99 | <- | Minus |
| arm_2L | 17524007..17524244 | 210..447 | 100 | <- | Minus |
| arm_2L | 17524329..17524521 | 17..209 | 100 | | Minus |
BO28347.pep Sequence
Translation from 16 to 3490
> BO28347.pep
MSKHNTRLDRHVKFRILQEDRLQSPRQKEDNIKRKKSTSKSENLTERGLS
SCLINSSVDLRITGGENDPAQRNVGKLPRTDSECQFKAPGYRFLTEQDTT
VNTHEVKMSPRVVTKKDLRHKCDFFAKNKDARPFKNKITQTLYRESSAQT
MAYLPEIFEANSVETLELFSLPSIFPVANRPGLHEVEILERARKRWAFSD
ALKIHFKNLLQDARKVAIKTELKEILEAIEWEQWIQREEDIQECQMMRLQ
IVIKMFDKREKEMHTASKTRIETACERIEKRRQAGLRKNEIEFQRGMRRM
EFQLTKNPRRWEKQSPMYALGSPSSEFYAPLLRYGVDPARRNFVSKTAQK
AFDMRIDDLEKRINNTDFKCPFRKLKDWSKPKKYDKEYERNFCKEDNLQK
LFESLKGLRTQANAEREEPKCLVRRRKPELGRAASQITLAYLTDLYERSD
SDEEYRKSRAYGSFSPHAKPGTNKVSETTLSHLKNDRKREEMEHMLNIYE
GTYVGWVMQFLSEEMTRLSELRRLHFFSIMAQKERWRREAAEAGLRQKEN
ELRLLYEELFQHCNVVNNEISNKYFANILSSDMYGMADGLAGETVSELAK
KIDADILRWLESFKLIQNPLTYVPLRIMLNDMISPNMNNILQRYENSLIA
QYVLEDVIFPKVWNELDPFDIGCTLTSDLIDRLIDNDLYLMSTDSESETP
QKTSWREAHAIIRKIIRQAVPGDRWLQENERIVNENYNDLFDDVFAGIFD
KSENPPAVRPSQLIELCPTVSHNYIHHMDNIREMENFHTENATSQPGSEF
EKKQLLNILRKRKEDNITRNLQNFDNPLAGEIPSDSDIFLRSQIFNPMPL
PTTTPSDLFSLRSTLDVSHASKLGSFVGRGYRVMLPSEEEKNSNVDVSKL
PIDNDEEEKFELPASEFSEITGTDIDSPKVSFHKILSTMELRTRISSASE
SHDKQPEEENLKPLDSSPLKLESLTTPSPGEAKTRDSPSVELKPVTELVS
ENVIPTTSLGTSSIITNDTNTTTNDLDQEKETSREMRSVVEFNLEPLNRP
EAELGLDAELGPDLEDEPGSELLLWPERESFIPPVRSSGVRNSTVEPIKS
EKGSHSSKRPRNKSITDQYEVEERYIGSVSKNHIQIKDKTAENIDNIVPE
SEASFLDH
BO28347.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15143-PA | 1152 | CG15143-PA | 1..1152 | 1..1152 | 5959 | 100 | Plus |
| CG15144-PB | 1038 | CG15144-PB | 123..1003 | 59..926 | 2259 | 52 | Plus |
| CG15145-PA | 876 | CG15145-PA | 16..829 | 7..817 | 2038 | 50.2 | Plus |
