BO28353.complete Sequence
1660 bp assembled on 2011-06-28
GenBank Submission: KX796455
> BO28353.complete
GAAGTTATCAGTCGACATGCTGTTCTGGAGATTGGTGCTCCTGGGAATGC
TCTATCTGTCCCTGAGTTTTGGCCAGTTGCGAGAGAACAATGCCCAACAG
CGCTTTGCAAGATCTGTGGTGAATATGGATGATATGCTGAACTTAGAGGA
CGATCTTGTCTCAAATGTGGAAAAGCTGGCGGAAGCGCTTGCACGAAAAG
CCAAAACCATTAAATGGGGCGTCTTCAAGATGATGAAAAGGCGACAGGAG
TATAAGTCGTCTATGGAAATTTTTGCCAATCCGATTGACACCTTTTCCCT
CATTCGTCACATGCAGTCGAACTGGTTGATGTGGCTATTGTACTTGGAAA
CGCCTGTTGGCCAAGAGGAATTGTTTTTTGTGGACTCAAGGATGCCCCTA
TTGCCAAAGTACTTTGACTTTATAGATGCCGCTGAAGGCATTAGAAAAAT
GCAGGCCACATACCAGATGTTTTCCTCAGATATAGCCAAAGGCTTACTAG
ATGGAGTGCAATACAACTCTTCTCTAAAACCCATCGATTGTCTCGCAATT
GGTCTTCATCTGATGAATAACTCGCGTTGGTATGCTGCCGAGCAATGGAT
AAGTGCTAGCATTGAAGCCTATGATCAGAAAAGTTCTCAGACCGATATGG
AGTTATTGAGGGGACCAAAACTGGCTGACCTGTGCAGAATACTGGGTCAA
GTACAAATGAAGCAGAGAAATCATGAGGGTGCTCTTCAAGCCTATCAGGT
TGCGCTAAAGCTTTCGCCTCATGACCCAGAAATATATGAGGAGTATCGGA
TCCTGGAAAAAAGAGATCTTACGTTGTCAGATATCGAACCGATTGAACAG
GATAAGGACAACTCCCACGAAAGATTGGTTCTTCCGCCCTGTTGCAGTGG
TCGCTGTCAAGTTCCCCGAAATCTGAGTAATCTATATTGTGTATATAACC
ATGTTACCTCCCCATTTCTGCAACTGGCCCCCATCAAAACGGAGATTCTA
TCGATTGATCCCTTCGTAGTGCTCCTCCATGACATGATCTCCCAAAAGGA
GAGTACTCTCATTAGAACTTCGAGCAAGGAACACATGTTGCCGTCTGCCA
CAACTGACCCAGATGCATCCGATGACGAAACACAAGTCGACACATACCGC
ACCTCAAAGTCTGTTTGGTATAGCAGTGACTTCAACGATACGACCAAGAA
GATAACCGAGCGCTTGGGAGATGCGACTGGGCTGGACATGAACTCTACGG
AGTTCTATCAGGTCATTAACTACGGGCTAGGGGGTTTCTTCGAGACGCAT
TTGGACATGTTGCTGTCGGAAAAAAACAGGTTCAATGGAACCAGTGATCG
TATTGCCACCACACTCTTCTATCTTAATGAAGTTCGCCAGGGCGGCGGCA
CGTACTTCCCTCGACTAAATCTCACGGTATTCCCACAGCCAGGATCGGCC
CTCTTTTGGTATAACTTGGACACGAAGGGTAACGATCATATGGGTTCCCT
GCACACCGGCTGCCCGGTCATCGTGGGTTCCAAATGGGTTATGAGCAAGT
GGATAAATGATATGGGACAGGAGTTTACAAGGCCCTGTGTCGAGTCAAGT
TTAAGCTCAAATGAGGTGTTATCAGCTGAGCGGCTTATAATCGCAAGCTT
TCTAGACCAT
BO28353.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaNE2-RA | 1629 | CG9720-PA | 1..1625 | 17..1641 | 8125 | 100 | Plus |
| CG31524-RB | 1608 | CG31524-PB | 412..1040 | 443..1071 | 370 | 70.6 | Plus |
| CG31524-RA | 1611 | CG31524-PA | 415..1043 | 443..1071 | 370 | 70.6 | Plus |
| CG31524-RB | 1608 | CG31524-PB | 1318..1550 | 1355..1587 | 235 | 73.4 | Plus |
| CG31524-RB | 1608 | CG31524-PB | 71..150 | 93..172 | 220 | 85 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:27:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaNE2-RA | 1782 | CG9720-RA | 5..1629 | 17..1641 | 8125 | 100 | Plus |
| CG31524-RB | 1688 | CG31524-RB | 421..1049 | 443..1071 | 370 | 70.6 | Plus |
| CG31524-RA | 1691 | CG31524-RA | 424..1052 | 443..1071 | 370 | 70.6 | Plus |
| CG31524-RB | 1688 | CG31524-RB | 1327..1559 | 1355..1587 | 235 | 73.4 | Plus |
| CG31524-RB | 1688 | CG31524-RB | 80..159 | 93..172 | 220 | 85 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:27:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30510620..30511275 | 1372..717 | 3280 | 100 | Minus |
| 3R | 32079331 | 3R | 30511337..30511537 | 717..517 | 1005 | 100 | Minus |
| 3R | 32079331 | 3R | 30512010..30512210 | 217..17 | 1005 | 100 | Minus |
| 3R | 32079331 | 3R | 30510398..30510563 | 1538..1373 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 30511597..30511749 | 516..364 | 765 | 100 | Minus |
| 3R | 32079331 | 3R | 30511801..30511950 | 365..216 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 30510236..30510339 | 1641..1538 | 520 | 100 | Minus |
| 3R | 32079331 | 3R | 30513086..30513273 | 1071..884 | 340 | 78.7 | Minus |
| 3R | 32079331 | 3R | 30514197..30514276 | 172..93 | 220 | 85 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:27:31 has no hits.
BO28353.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 15:48:56 Download gff for
BO28353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE2-RA | 5..1629 | 17..1644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:24 Download gff for
BO28353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE2-RA | 5..1629 | 17..1644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:36 Download gff for
BO28353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE2-RA | 5..1629 | 17..1644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:36 Download gff for
BO28353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30510231..30510338 | 1539..1644 | 97 | <- | Minus |
| 3R | 30510398..30510563 | 1373..1538 | 100 | <- | Minus |
| 3R | 30510620..30511275 | 717..1372 | 100 | <- | Minus |
| 3R | 30511338..30511537 | 517..716 | 100 | <- | Minus |
| 3R | 30511597..30511747 | 366..516 | 100 | <- | Minus |
| 3R | 30511801..30511949 | 217..365 | 100 | <- | Minus |
| 3R | 30512011..30512210 | 17..216 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:24 Download gff for
BO28353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26335953..26336060 | 1539..1644 | 97 | <- | Minus |
| arm_3R | 26336120..26336285 | 1373..1538 | 100 | <- | Minus |
| arm_3R | 26336342..26336997 | 717..1372 | 100 | <- | Minus |
| arm_3R | 26337060..26337259 | 517..716 | 100 | <- | Minus |
| arm_3R | 26337319..26337469 | 366..516 | 100 | <- | Minus |
| arm_3R | 26337523..26337671 | 217..365 | 100 | <- | Minus |
| arm_3R | 26337733..26337932 | 17..216 | 100 | | Minus |
BO28353.pep Sequence
Translation from 16 to 1660
> BO28353.pep
MLFWRLVLLGMLYLSLSFGQLRENNAQQRFARSVVNMDDMLNLEDDLVSN
VEKLAEALARKAKTIKWGVFKMMKRRQEYKSSMEIFANPIDTFSLIRHMQ
SNWLMWLLYLETPVGQEELFFVDSRMPLLPKYFDFIDAAEGIRKMQATYQ
MFSSDIAKGLLDGVQYNSSLKPIDCLAIGLHLMNNSRWYAAEQWISASIE
AYDQKSSQTDMELLRGPKLADLCRILGQVQMKQRNHEGALQAYQVALKLS
PHDPEIYEEYRILEKRDLTLSDIEPIEQDKDNSHERLVLPPCCSGRCQVP
RNLSNLYCVYNHVTSPFLQLAPIKTEILSIDPFVVLLHDMISQKESTLIR
TSSKEHMLPSATTDPDASDDETQVDTYRTSKSVWYSSDFNDTTKKITERL
GDATGLDMNSTEFYQVINYGLGGFFETHLDMLLSEKNRFNGTSDRIATTL
FYLNEVRQGGGTYFPRLNLTVFPQPGSALFWYNLDTKGNDHMGSLHTGCP
VIVGSKWVMSKWINDMGQEFTRPCVESSLSSNEVLSAERLIIASFLDH
BO28353.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:53:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaNE2-PA | 542 | CG9720-PA | 1..542 | 1..542 | 2836 | 100 | Plus |
| CG31524-PA | 536 | CG31524-PA | 5..536 | 5..542 | 1607 | 58.1 | Plus |
| CG31524-PB | 535 | CG31524-PB | 5..535 | 5..542 | 1593 | 58.1 | Plus |
| PH4alphaPV-PA | 525 | CG31015-PA | 6..525 | 4..529 | 796 | 33.3 | Plus |
| CG31013-PA | 534 | CG31013-PA | 4..524 | 3..525 | 791 | 34 | Plus |
