Clone BO28355 Report

Search the DGRC for BO28355

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:283
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG13203-RD
Protein status:BO28355.pep: Imported from assembly
Sequenced Size:1009

Clone Sequence Records

BO28355.complete Sequence

1009 bp assembled on 2011-06-27

GenBank Submission: KX799718

> BO28355.complete
GAAGTTATCAGTCGACATGTCCGCTCCGGTCCGCGGACTGGACGAGAGCA
GCAAGGGCGTCATAGCCGCCAGCAAGCGCAGCCAGCAGAAATTGCGTCGA
CGCAAGATCTTCACGAGAACGCCCTCGTCCTCCGTACCGCTCGATGTCAT
CGGGGACAACTCTACGTCCTCGTCCTCCGTCGCCGGAAACGCATCCAAGA
AGGCTTTGAATCGGGCACGCAGCGTCGTTGCACCCGATGTGATTACCCTG
GTGTCCCTGTTGAGTTCCGAGGGCAGCGACTCCGAGCGGGAGGATAACAG
TTCAGTGGCGGTATCATCGCCGCCAACTGGCGGGTCGGATAAACAAACAT
CGGGCGCCTCGCAGCGAAGGGCGCCTTTGTTGAGGAAGACGGGCAAATCG
GTCTCGTTTCAAGACAGCTATCCGCCCACCTTCCAACTGGCCTCCAAGGA
GTACTCGCACATGATACGCCGCGGTTCGATAGCACCTCTGGCAGCCCGAA
TCCGAGCCAATCGACCGCCCACAGCGCCGCCAGTTTCCATTTTCCTAACC
GACGTCCAGGCCAAAATGGACCAGCAGCCGAAGAAGGAGGGTGGAGCTGA
CCCACCCGTTGTCACCTTATCGCCGGACGAGGCCAAGAAGGAGAACAATA
ACAACGCGGCCAATTGCGAGGACCAACAACCGCAGCCGGATCACAACTAT
CCGGCGTATGTGCGCAGTCTGAAGGAACGCGAGTGCTGGAAGTTGCACCA
GAAGATGGGAGCCAAGGGCGTCAGTGTGAGCTATGAAACGGTGTTGAGGG
GTATGCTCACGCCCACCGAGTTCCGGCACTTTCAAAAGCAGCGGGAGCAG
GAGGAGGCCCGAGTTCTCGAGGAGGCGGAGGCCGCCGAAGCGGCTGCTGC
AGCCGCAATCCTTGAGAGCGGCGAAAAGGATGGTCGCAAGCCTCCAGTCA
CGGCCATCGAACGCCTCTCGGAAGCTCTGCTCCAGAGCAAGGCAAGCTTT
CTAGACCAT

BO28355.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13203-RD 978 CG13203-PD 1..975 17..991 4860 99.9 Plus
CG13203-RC 1626 CG13203-PC 649..1623 17..991 4860 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13203-RD 1617 CG13203-RD 352..1326 17..991 4860 99.9 Plus
CG13203-RC 2286 CG13203-RC 1021..1995 17..991 4860 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11376228..11376818 401..991 2940 99.8 Plus
2R 25286936 2R 11375534..11375918 17..401 1925 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:53:34 has no hits.

BO28355.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:25:09 Download gff for BO28355.complete
Subject Subject Range Query Range Percent Splice Strand
CG13203-RD 352..1326 17..993 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:05 Download gff for BO28355.complete
Subject Subject Range Query Range Percent Splice Strand
CG13203-RC 1021..1995 17..993 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:02 Download gff for BO28355.complete
Subject Subject Range Query Range Percent Splice Strand
CG13203-RC 1021..1995 17..993 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:02 Download gff for BO28355.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11375534..11375918 17..401 100 -> Plus
2R 11376229..11376818 402..993 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:05 Download gff for BO28355.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7263039..7263423 17..401 100 -> Plus
arm_2R 7263734..7264323 402..993 99   Plus

BO28355.pep Sequence

Translation from 16 to 1009

> BO28355.pep
MSAPVRGLDESSKGVIAASKRSQQKLRRRKIFTRTPSSSVPLDVIGDNST
SSSSVAGNASKKALNRARSVVAPDVITLVSLLSSEGSDSEREDNSSVAVS
SPPTGGSDKQTSGASQRRAPLLRKTGKSVSFQDSYPPTFQLASKEYSHMI
RRGSIAPLAARIRANRPPTAPPVSIFLTDVQAKMDQQPKKEGGADPPVVT
LSPDEAKKENNNNAANCEDQQPQPDHNYPAYVRSLKERECWKLHQKMGAK
GVSVSYETVLRGMLTPTEFRHFQKQREQEEARVLEEAEAAEAAAAAAILE
SGEKDGRKPPVTAIERLSEALLQSKASFLDH

BO28355.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13203-PD 325 CG13203-PD 1..325 1..325 1627 100 Plus
CG13203-PC 541 CG13203-PC 217..541 1..325 1627 100 Plus