Clone BO28357 Report

Search the DGRC for BO28357

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:283
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG15219-RA
Protein status:BO28357.pep: Imported from assembly
Sequenced Size:385

Clone Sequence Records

BO28357.complete Sequence

385 bp assembled on 2011-06-27

GenBank Submission: KX799710

> BO28357.complete
GAAGTTATCAGTCGACATGGAATACGGAAATGGTATGCAATACGATGGTT
ATAGCCAAGGTGGCGAGGGCTTTGAAATGCTGTACAACCAAACGAGCAGT
GGCCATGGATATAGCCAGCAGCAGAGTAATTGCGGACAAGGTTCTTCAAA
TTTTAATGGTGCATCTGCATCGCTTGGAGGTCCTGGCTATCGCAGTCCTT
TGCGATACACAAAAATGCTTCGTGAGATGAACTCTCGCAACGGGCTTTAC
TCTCCAATGGAACAGCAGCGGAGCAGTGGGCAAGGCGACTACTATAATAC
ATTGCCCGGCCTTGGCGGCCCAGAAGGTCAAGCTTATCAGTCGCGGGGCA
ATGGAAATCCATACTACGCAAGCTTTCTAGACCAT

BO28357.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG15219-RA 354 CG15219-PA 1..351 17..367 1725 99.4 Plus
CG15219-RC 360 CG15219-PC 1..335 17..367 1450 94.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG15219-RA 521 CG15219-RA 111..462 16..367 1730 99.4 Plus
CG15219-RC 505 CG15219-RC 111..446 16..367 1455 94.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22105116..22105299 249..66 890 98.9 Minus
2L 23513712 2L 22104950..22105067 367..250 590 100 Minus
2L 23513712 2L 22105350..22105402 68..16 265 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:54:05 has no hits.

BO28357.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:25:11 Download gff for BO28357.complete
Subject Subject Range Query Range Percent Splice Strand
CG15219-RA 106..456 17..369 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:17 Download gff for BO28357.complete
Subject Subject Range Query Range Percent Splice Strand
CG15219-RA 112..462 17..369 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:14 Download gff for BO28357.complete
Subject Subject Range Query Range Percent Splice Strand
CG15219-RA 112..462 17..369 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:14 Download gff for BO28357.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22104948..22105067 250..369 98 <- Minus
2L 22105116..22105297 68..249 98 <- Minus
2L 22105351..22105401 17..67 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:17 Download gff for BO28357.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22104948..22105067 250..369 98 <- Minus
arm_2L 22105116..22105297 68..249 98 <- Minus
arm_2L 22105351..22105401 17..67 100   Minus

BO28357.pep Sequence

Translation from 16 to 385

> BO28357.pep
MEYGNGMQYDGYSQGGEGFEMLYNQTSSGHGYSQQQSNCGQGSSNFNGAS
ASLGGPGYRSPLRYTKMLREMNSRNGLYSPMEQQRSSGQGDYYNTLPGLG
GPEGQAYQSRGNGNPYYASFLDH

BO28357.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG15219-PA 117 CG15219-PA 1..117 1..117 642 100 Plus
CG15219-PC 119 CG15219-PC 1..79 1..79 428 100 Plus