BO28360.complete Sequence
4801 bp assembled on 2011-07-18
GenBank Submission: KX796380
> BO28360.complete
GAAGTTATCAGTCGACATGGCGGATGAAAAGGCCAAGGAATCCTTCCGCG
AGCGGCAAGCGCAGGAGTTGGAGGTTATAAAGTCCATCTTTGGCTGTGAT
GTGGAGGACCTAAGACCCCAGGCGAATCCTTCCCTGTGGAAGCCAACGGA
CATACGGATACAACTTACCCCACTTCGAGACTCCTCGAACGGACTGGAAA
CCTATGTGTGCACCAAGCTGCACGTCACCTGTCCATCAAAGTATCCAAAA
TTGCCCCCTAAGATATCTCTGGAGGAGTCCAAAGGCATGTCGGATCAGCT
GCTGGAGGCCCTACGCAACCAATTGCAGGCTCAATCCCAAGAGCTACGTG
GCGAAGTGATGATTTATGAATTGGCCCAGACCGTTCAGGCCTTTCTCCTC
GAACACAACAAACCACCAAAGGGATCATTCTACGACCAGATGCTCCAGGA
TAAACAGAAGCGCGACCAGGAGCTACAGGACATACAGCGGCAGCGGGAGT
CCCTGCAACGCCAGACGCTCATCGACGAGGTGGAGCGGCGCAAAGAGATG
TTCAAAACGGAGGCTAAGAGGCGCGGCGAACCAAGGCGCAGCATGAGTGA
GTCTAACCCACGGCATCCTAGCTCGTCGGAGAGCTCCGAGAACTCCTCGC
CCTACTATCGTGGTCACATCTACCCCTCCAAATGCCTGGATCACCGCAAC
ACGGAGACGCTCTACTTCCACAAGATGGGCAGGCAGATTCAGCGTGGATG
CTGCGTTGGTCACTCCCAACGAGGTTGCATCGCCTACACTGGCATAGATA
TGCACTGCGGCCAGTTGCTCTACATAACAGAATGGAACATCAAGTACAGC
CAACTGGAGCAGCCATGCATCGGCGGAGGCAAGTGCCACTGGAGCAGCGA
GTCAAAGTGCATGGGCAGTCATCGTGTGGACGAAGTGATGGCCTCCATTG
AAAAGCAGGTGTCCTCACTGTCCCAACTACAGCACAAAAACCTCGTCTCG
TACGAGTGCGTACTGTGCATCAAGCGAAAGGAAGGTCTACTTGTGTATTT
GGTCCAAGACTTCCTCCTTGGCACCAGCGTGTTCAGCATCTCCTCCTCGC
TTGGCTGGTGCATGGACGGCGCACGAATGGTTGCGCGCGGCGTGCTGGAC
GCCTTAGTATTTCTTCACAACAAGGGTGTATCCCATAGTCACCTGCTCGA
CACCACTGTTTTTATGGACAACACAGGCAATGTGAGGGTATCAGACTTTT
CGCTCGTTCCCAATCTTCTAGAACTTCTGAGCGGAGCTGGACAAAGCAGC
AGTTGCGGGGACTTACCCGCGTTAGGTGCCCTGGTGGAGAGTTTGATGCC
CACTAACAGTTACGAGATGCGCGACTTTGTAGACAAGTGTAACTCGGACC
GAACTCTTTCCGCATCAGAGTTATTGGAGCATCCATTCTTACGCTTTTAC
GTCGACAATGGCCAGCAGCAGGTGATGCCATTACCACAGCAGCAACATCC
TAACACCGTCCAGCGCACTGGATCCGCCATGCCGTACCAGATACCGACAC
TGGCCCTAAGCCAATCCCGCCTGCGAACGGAATTCGAGGTGCTCATGTAC
TTGGGAAAGGGTGCCTTTGGTGACGTGCTAAAGGTGCGCAACATTTTAGA
CAACCGAGAGTACGCCATCAAGCGCATACCATTGCCCGCGAGGAGTCGAC
AGCTGTACAAAAAGATGACGCGCGAGGTGGAGCTTCTTTCGCGGCTGAAT
CATGAGAATGTAGTTCGATACTTTAACAGTTGGATAGAAAGTGTAGATGA
CGCAGATGCCGCTGAGATGGATAAGCTGCTGGGCGGTGAGTGGTCCCAGA
GTCAGCAGGACCTTAGCGTAAAACCTGCCAAGTCACCACAGCTGGGGCCC
ACTTTAGAGGAGGACGAGGATGAAGAGGACAGCTCATCCAGCATGTGGAA
CGGTTACATACCCAACATGGAGGACTCTGATTCGGATGGCATTGAATTTG
TGGACTCCAACGGCAAGGTGGCTGTCTACGACGACGAAGAGCAGGAGGAT
TCCACCAGAGGCAAGACCAATTCGCCAAAACCTTTGATGCAGGTCATGTA
CATCCAGATGGAGTTCTGTGAGAAATGCACATTGCGCACCGCCATCGATG
ACAATCTCTTCAATGACACGGATCGTCTGTGGCGCTTATTTCGGGAGATT
GCCGAGGGTCTCGCGCATATTCACCAGCAAGGCATTATCCATCGGGACCT
AAAGCCCGTTAACATCTTCTTGGACTCGCACGATCAGATTAAGATCGGTG
ACTTTGGTCTGGCCACCACCAGTTTTCTGGCTCTCCAAGCCCACGACGCA
GCGCCTGCGCCTGTTAACCAGATAACCAGTGCGGAAGACGGCACTGGTAC
TGGTAAGGTCGGCACCACTCTATACGTGGCTCCCGAATTGACAGGAAATG
CTTCCAAGTCTGTGTACAACCAGAAGGTTGATATGTACACCCTGGGAATC
ATTCTTTTCGAGATGTGCCAACCGCCGTTCGACACAAGCATGGAGCGGGC
TCAGACCATTATGGCTCTCAGGAATGTTTCCATTAATATACCGGATGCTA
TGCTTAAGGATCCCAAGTATGAGAAGACGGTGAAGATGCTTCAGTGGCTT
CTCAACCACGATCCCGCCCAGAGACCTACTGCCGAGGAGCTGCTCATCTC
AGACCTGGTTCCACCAGCCCAGTTGGAGGCCAATGAGCTCCAAGAAATGC
TGCGTCACGCCCTCGCTAATCCGCAGAGCAAGGCCTACAAGAACCTAGTT
GCCCGATGTCTTCAGCAGGAGAGCGACGAGGTGCTGGAACACACCTACCA
CTTGGGAAGCAGTCGAGCTATGAAATCCTGGAACTCGGCAATTATAATCG
ATGATATAGTATCCCTGAACCCAGTGATTGAGTTTGTTAAGGCTAAGGTC
GTGAATTTATTCCGCAAGCATGGAGCTATAGAGGTGGACTCACCGCTCTT
ATCCCCACTTTCCGCAAGGAACAGCACTGCGAATGCGAACGCCAATGCCG
TACACCTTATGACCCACTCGGGATGTGTGGTGGTGCTACCCTGTGACCTG
CGGACTCAGTTTGCGCGTCACGTTACCATGAACAGCGTGAATCTCATCCG
GCGCTACTGTGTGGACCGTGTCTATCGGGAGGAGCGAGTGTTTAATTTTC
ATCCCAAGCAAAGCTACGACTGCTCTTTCGATATAATTGCACCCACAACT
GGAAGTCATTTAGTTGATGCCGAGCTGCTGTCGTTGGCTTTTGAAATCAC
CAGTGAACTGCCCCGATTACGCGAAAAGAATTTGGCGATCCGCATGAACC
ACACTAATCTCTTGAGGGCCATCCTCATCTTCTGCAATGTACCAAAGGCT
CAGTATGGAGCACTCTTCGAGGGCACCATGGACTTCATCGAGTCGCGCAT
CTCACGCTTCCAATTTCACTCGAGTATTACCGGGATTATGGAAAAGTCGC
GAACATCTGCTCAAACTCTGATGGACATGTTGTTAGCTAACTTTCTGCTG
ACTGGTTCCAGAAGCACTGTGGACGATTCCGCGCTGAAATCTTTGATGCG
TGGAAAGGGAGAAGCAGCTTCACTGGCAAGGGGAGCATTGCGGGAACTTG
AAACAGTTGTGGGACTGGCTTACAGTCTAGGCGTAAAGTGTCCTATACAC
ATATGGGCTGGCTTGCCCATCAGCTTCGATCGTGCCAGCAACGGTGGAAT
TGTGTGGCAGATGACCGCTGACCTGAAGCCCAATCGCTCTGGCCATCCTT
CGGTTCTGGCGATTGGGGAGAGATACGACTCTATGCTGCATGAATTCCAG
AAGCAGGCGCAGAAGTTTAATCCCGCCATGCCAGCACGTGGAGTTCTTAG
TGGAGCGGGCTTGACGTTCTCCCTAGACAAGCTGGTAGCTGCTGTGGGTG
TGGAATACGCTAAGGATTGTCGGGCGATAGATGTGGGCATTTGCGTGTGT
GGAACCCGTCCACCGCTAAAGGATGTGACCTATATCATGCGTCTGCTGTG
GTCGGTTGGCATCCGATGTGGAATTGTGGAGGCCGCCAGCGAATTGGGAG
ATGAAGCACAGGATCTTGCCCGCCTTGGGGCGTTACATGTCATCCTGGTG
GCGGAAAATGGCTCATTGAGAGTGAGATCTTTCGAGAGGGAACGATTCCA
GGAGCGTCACCTAACAAGAACCGAACTGGTGGAGTTCATCCAGAAGATGC
TGCGAAGTGATGGACTCAATGGGACCACCGTGGACAACTTCAGCCAGTTG
TCAGCCTTGGGTAGTGGTGACAACAGAAGCAGTGGTGGAAAGGAAAGAGA
ACGCGGCGAGAATGGTCTGAGCACCTCCGCATCGAATGCCACCATCAAGA
ACAACTATAGCCAGTTGCCGAATCTTCAGGTGACGTTTCTCACCCACGAC
AAGCCAACGGCGAACTACAAAAGGCGGCTAGAGAATCAGGTGGCGCAGCA
GATGAGCTCAACGCTATCGCAGTTCCTCAAGAAGGAGACCTTTGTGGTCC
TGGTGGTGGAGTTGCCGCCTGCTGTTGTAAATGCCATTGTGGGGGCCATT
AATCCACGGGAAATACGCAAGCGAGAGACTGAACCGGAAATCAACTATGT
GATCGAGCGATTTTCGAAATACAAGCGCTACATCTCCGAGATAAACGAAG
AGGTTGTCGACTATCTGAGCGATGCCAAGACTCCCATTGTGGCCTTGTAC
AGCATATCCGATTCCTACTACCGCGTCATCATCGCAAGCTTTCTAGACCA
T
BO28360.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:42:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gcn2-RB | 4770 | CG1609-PB | 1..4767 | 17..4783 | 23775 | 99.9 | Plus |
| Gcn2-RA | 4770 | CG1609-PA | 1..4767 | 17..4783 | 23775 | 99.9 | Plus |
| Gcn2-RC | 4776 | CG1609-PC | 1..4773 | 17..4783 | 23680 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:42:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gcn2-RB | 5284 | CG1609-RB | 332..5098 | 17..4783 | 23775 | 99.9 | Plus |
| Gcn2-RA | 5737 | CG1609-RA | 332..5098 | 17..4783 | 23775 | 99.9 | Plus |
| Gcn2-RC | 5290 | CG1609-RC | 332..5104 | 17..4783 | 23680 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:42:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31399100..31400155 | 2633..3688 | 5280 | 100 | Plus |
| 3R | 32079331 | 3R | 31400216..31401188 | 3687..4659 | 4835 | 99.8 | Plus |
| 3R | 32079331 | 3R | 31396985..31397615 | 758..1388 | 3155 | 100 | Plus |
| 3R | 32079331 | 3R | 31397667..31398239 | 1387..1959 | 2850 | 99.8 | Plus |
| 3R | 32079331 | 3R | 31396402..31396909 | 253..760 | 2525 | 99.8 | Plus |
| 3R | 32079331 | 3R | 31398545..31399044 | 2136..2635 | 2500 | 100 | Plus |
| 3R | 32079331 | 3R | 31398305..31398481 | 1960..2136 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 31396121..31396293 | 81..253 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 31401250..31401374 | 4659..4783 | 625 | 100 | Plus |
| 3R | 32079331 | 3R | 31395991..31396056 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:42:36 has no hits.
BO28360.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-18 15:33:52 Download gff for
BO28360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gcn2-RA | 334..5100 | 17..4785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:23 Download gff for
BO28360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gcn2-RA | 332..5098 | 17..4785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:13 Download gff for
BO28360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gcn2-RA | 332..5098 | 17..4785 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:13 Download gff for
BO28360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31395991..31396056 | 17..82 | 100 | -> | Plus |
| 3R | 31396123..31396292 | 83..252 | 100 | -> | Plus |
| 3R | 31396402..31396907 | 253..758 | 99 | -> | Plus |
| 3R | 31396986..31397613 | 759..1386 | 100 | -> | Plus |
| 3R | 31397667..31398239 | 1387..1959 | 99 | -> | Plus |
| 3R | 31398305..31398481 | 1960..2136 | 100 | -> | Plus |
| 3R | 31398546..31399044 | 2137..2635 | 100 | -> | Plus |
| 3R | 31399103..31400155 | 2636..3688 | 100 | -> | Plus |
| 3R | 31400218..31401188 | 3689..4659 | 99 | -> | Plus |
| 3R | 31401251..31401374 | 4660..4785 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:23 Download gff for
BO28360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27221713..27221778 | 17..82 | 100 | -> | Plus |
| arm_3R | 27221845..27222014 | 83..252 | 100 | -> | Plus |
| arm_3R | 27222124..27222629 | 253..758 | 99 | -> | Plus |
| arm_3R | 27222708..27223335 | 759..1386 | 100 | -> | Plus |
| arm_3R | 27223389..27223961 | 1387..1959 | 99 | -> | Plus |
| arm_3R | 27224027..27224203 | 1960..2136 | 100 | -> | Plus |
| arm_3R | 27224268..27224766 | 2137..2635 | 100 | -> | Plus |
| arm_3R | 27224825..27225877 | 2636..3688 | 100 | -> | Plus |
| arm_3R | 27225940..27226910 | 3689..4659 | 99 | -> | Plus |
| arm_3R | 27226973..27227096 | 4660..4785 | 98 | | Plus |
BO28360.pep Sequence
Translation from 16 to 4801
> BO28360.pep
MADEKAKESFRERQAQELEVIKSIFGCDVEDLRPQANPSLWKPTDIRIQL
TPLRDSSNGLETYVCTKLHVTCPSKYPKLPPKISLEESKGMSDQLLEALR
NQLQAQSQELRGEVMIYELAQTVQAFLLEHNKPPKGSFYDQMLQDKQKRD
QELQDIQRQRESLQRQTLIDEVERRKEMFKTEAKRRGEPRRSMSESNPRH
PSSSESSENSSPYYRGHIYPSKCLDHRNTETLYFHKMGRQIQRGCCVGHS
QRGCIAYTGIDMHCGQLLYITEWNIKYSQLEQPCIGGGKCHWSSESKCMG
SHRVDEVMASIEKQVSSLSQLQHKNLVSYECVLCIKRKEGLLVYLVQDFL
LGTSVFSISSSLGWCMDGARMVARGVLDALVFLHNKGVSHSHLLDTTVFM
DNTGNVRVSDFSLVPNLLELLSGAGQSSSCGDLPALGALVESLMPTNSYE
MRDFVDKCNSDRTLSASELLEHPFLRFYVDNGQQQVMPLPQQQHPNTVQR
TGSAMPYQIPTLALSQSRLRTEFEVLMYLGKGAFGDVLKVRNILDNREYA
IKRIPLPARSRQLYKKMTREVELLSRLNHENVVRYFNSWIESVDDADAAE
MDKLLGGEWSQSQQDLSVKPAKSPQLGPTLEEDEDEEDSSSSMWNGYIPN
MEDSDSDGIEFVDSNGKVAVYDDEEQEDSTRGKTNSPKPLMQVMYIQMEF
CEKCTLRTAIDDNLFNDTDRLWRLFREIAEGLAHIHQQGIIHRDLKPVNI
FLDSHDQIKIGDFGLATTSFLALQAHDAAPAPVNQITSAEDGTGTGKVGT
TLYVAPELTGNASKSVYNQKVDMYTLGIILFEMCQPPFDTSMERAQTIMA
LRNVSINIPDAMLKDPKYEKTVKMLQWLLNHDPAQRPTAEELLISDLVPP
AQLEANELQEMLRHALANPQSKAYKNLVARCLQQESDEVLEHTYHLGSSR
AMKSWNSAIIIDDIVSLNPVIEFVKAKVVNLFRKHGAIEVDSPLLSPLSA
RNSTANANANAVHLMTHSGCVVVLPCDLRTQFARHVTMNSVNLIRRYCVD
RVYREERVFNFHPKQSYDCSFDIIAPTTGSHLVDAELLSLAFEITSELPR
LREKNLAIRMNHTNLLRAILIFCNVPKAQYGALFEGTMDFIESRISRFQF
HSSITGIMEKSRTSAQTLMDMLLANFLLTGSRSTVDDSALKSLMRGKGEA
ASLARGALRELETVVGLAYSLGVKCPIHIWAGLPISFDRASNGGIVWQMT
ADLKPNRSGHPSVLAIGERYDSMLHEFQKQAQKFNPAMPARGVLSGAGLT
FSLDKLVAAVGVEYAKDCRAIDVGICVCGTRPPLKDVTYIMRLLWSVGIR
CGIVEAASELGDEAQDLARLGALHVILVAENGSLRVRSFERERFQERHLT
RTELVEFIQKMLRSDGLNGTTVDNFSQLSALGSGDNRSSGGKERERGENG
LSTSASNATIKNNYSQLPNLQVTFLTHDKPTANYKRRLENQVAQQMSSTL
SQFLKKETFVVLVVELPPAVVNAIVGAINPREIRKRETEPEINYVIERFS
KYKRYISEINEEVVDYLSDAKTPIVALYSISDSYYRVIIASFLDH
BO28360.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:58:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gcn2-PB | 1589 | CG1609-PB | 1..1589 | 1..1589 | 8192 | 100 | Plus |
| Gcn2-PA | 1589 | CG1609-PA | 1..1589 | 1..1589 | 8192 | 100 | Plus |
| Gcn2-PC | 1591 | CG1609-PC | 1..1591 | 1..1589 | 8179 | 99.9 | Plus |
| PEK-PC | 1099 | CG2087-PC | 860..1083 | 688..913 | 290 | 35.8 | Plus |
| PEK-PB | 1110 | CG2087-PB | 871..1094 | 688..913 | 290 | 35.8 | Plus |
| PEK-PC | 1099 | CG2087-PC | 573..693 | 517..637 | 192 | 39.5 | Plus |
