BO28370.complete Sequence
2152 bp assembled on 2011-07-18
GenBank Submission: KX795812
> BO28370.complete
GAAGTTATCAGTCGACATGGCAAAGAAGGGGGGACAACAACAACTGCAGG
CTGACATCCAAACGGACGAGGAGCTGGAGCGTTTCATGGAGCGACCAGGA
CTCTTGGTTTTGGATGTTTACTCGGAATGGTGTGGTCCTTGCCAGGGTAT
GGTCGGATCCTTGCGTAAAATCAAACTGGATGTTGGTGGCGATAATCTGC
ATCTGGCCATTTGCAAATCGGATACGATCACGGCCTTGAAACGATTCAAT
AAGAGAAGTGAGCCCATCTGGCTTTTTGTGACGGGCGGCAGGGCCGTAAA
TCTTCTGTTCGGTTCGGATGTGCCTAAGCTGGTGAGTCTGCTGGTCAAAG
AGCTAGAGAAGACCATGCAAAAATCATCGCGTCCAGGCACCTACAGACTT
GACGAACTGCAGCCCATCGAGGTGGAGCAGCAGCGCATCAAAATGGAGGC
CATCGAGCGGGCCGAGCGGGCGGAGCGCGAGATAAAGCACAAGAAGCAGA
TAGACTACCTTAACCATGTAACGGACTCCATTATGGAGAATATGCCCGAT
ATTGGAGTGACTGTCTTTGGACCGCAAGTCAATCGTGATATGTTCAAGAA
GCTAACCGAACCAGCCGAAGCGCTCAAAATGCAGTGCAAGGATCGCCGGG
TCATCCAGGTGAGCACCGATCAGTTCGAGATTGTGAACTTTGCATGCAAG
AATCCCATGCCGCCGGATGTGATCGAACAACTGGACGGCAAGGAGCTGCT
CATGTGCTTCTGGAAGATTGACGAAAGCATCGGCACAGTGCCCAACGTTC
TAATGGCCTATGCCCACGAGCTAACCAAGGAGCGAGTGGCACCACCCAAC
GATGATATACCCGAGGAGCATGTTATACCGCCGCTAATCACAACTATGAA
ACTAAAAGTCGAGGTGGAGCTGAAGGAGGGCGAGACTTGGGTGGAGGAGA
TAAGCTCCGAAGAGGAGGCGAGGCTGCATCAGGCCAAAAGCAAGGCCAAA
ACCAAATCCATTAGCCACGAGGAAGCGCATCTGGCCGAAGAGGAAGCAGC
CGATCTGGATGCCGAGGAGGAGGCCAGCGAGGAGGAGACAGTTATGCCAG
AACCCGGCGGCGATGCAATGGGCGGGCTCCCATCAATGCCCGGCTTCGAA
CTGGAAATAGAACCCGTCGATGAGGCCGGCGAGGATGAGGAGGAGGTGCA
GGAGATCAAGGAGGAGGAGCCATCGAAGCCACTCACTCGCACCAAGACGG
TGAAAATGCCACCCATTTGGGTGCCCAACAGCCGGCGCACCCATGCCGCC
CTCATCTATGTGTTCTTCCGCGGTCAGACGTCTGGATTTCTGCCACCGGA
TCCCAAGCCGGAACCGCCGCATGTCATCATGGCGTTCGATGCCTCCAAGC
GCAAGGAGATCATGCATGTAATCGATCGACACAAGGACGATGTGCCGCTC
TATGGATTCTTCTCAAGCGCCGAACCGGATGAGGCCGAATTGATTGCCAC
CTCAACGGACAAGTACGAGAGCAGTCCGCACTCATCTGGCGACAAGATCG
TGCTGAAGGTCAACAAGGTCCAGTCCAACATGATGTTATCCCTGGTCTCG
TACGGTCCCAGCTATGTGAGTCCCAATGTAACTGTCGGCAAGGACGAGGC
GCTCAAGTTCTTCCCGGAGGACTACAAGCCCCAGGAGGAGGTCGTCGTCG
AGGTCGAAAAGAAAAAGAAGAAGAGCAAGCGGGCCACCGAAATCAATCAG
GAAATGGAGGCAGCGGCTGCAGCTGCAGCTGCAGCGGCGGCTCATCCTTC
GGAGGCTCCTGCTCCAGTCGAAGCAGAAGCTCACGCCGCAGAGGCTCCCG
CTGCCGTGGAAGGAGATGCCGCACCAGCGGCTGCCGAAGCACCGCCAGCC
GGAGATGCCGCACCGGTGGCGCCACCACCAGCTGAGCCAGCCGCCGAAGG
AGCGGCGCCAGAGGCACCGGCTCCAGCTCCAGCTCCAGCTCCAGCTCCGG
AAGCCCCAGCAGCGGAGGAGGCGCCACATGAGGCGCCCAAGGAGGAGGCA
CCTGCCGCCGAAGCGCCACCGGAACCGGAGGCAGAAGCTCCTGCTCCTGC
TCCTGCCGAGCCTGCACCTGAGCCAGCAGCCGAGGCAAGCTTTCTAGACC
AT
BO28370.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:43:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18130-RA | 2121 | CG18130-PA | 1..2118 | 17..2134 | 10575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18130-RA | 2344 | CG18130-RA | 103..2220 | 17..2134 | 10575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:43:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11990977..11992230 | 1536..283 | 6255 | 99.9 | Minus |
| X | 23542271 | X | 11990242..11990654 | 2134..1722 | 2065 | 100 | Minus |
| X | 23542271 | X | 11990719..11990905 | 1723..1537 | 935 | 100 | Minus |
| X | 23542271 | X | 11992414..11992518 | 211..107 | 525 | 100 | Minus |
| X | 23542271 | X | 11992576..11992666 | 107..17 | 455 | 100 | Minus |
| X | 23542271 | X | 11992282..11992354 | 284..212 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:43:04 has no hits.
BO28370.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-18 15:33:53 Download gff for
BO28370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18130-RA | 103..2220 | 17..2136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:39 Download gff for
BO28370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18130-RA | 103..2220 | 17..2136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:29 Download gff for
BO28370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18130-RA | 103..2220 | 17..2136 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:29 Download gff for
BO28370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11990240..11990652 | 1724..2136 | 99 | <- | Minus |
| X | 11990719..11990905 | 1537..1723 | 100 | <- | Minus |
| X | 11990977..11992229 | 284..1536 | 99 | <- | Minus |
| X | 11992283..11992354 | 212..283 | 100 | <- | Minus |
| X | 11992414..11992517 | 108..211 | 100 | <- | Minus |
| X | 11992576..11992666 | 17..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:39 Download gff for
BO28370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11884273..11884685 | 1724..2136 | 99 | <- | Minus |
| arm_X | 11884752..11884938 | 1537..1723 | 100 | <- | Minus |
| arm_X | 11885010..11886262 | 284..1536 | 99 | <- | Minus |
| arm_X | 11886316..11886387 | 212..283 | 100 | <- | Minus |
| arm_X | 11886447..11886550 | 108..211 | 100 | <- | Minus |
| arm_X | 11886609..11886699 | 17..107 | 100 | | Minus |
BO28370.pep Sequence
Translation from 16 to 2152
> BO28370.pep
MAKKGGQQQLQADIQTDEELERFMERPGLLVLDVYSEWCGPCQGMVGSLR
KIKLDVGGDNLHLAICKSDTITALKRFNKRSEPIWLFVTGGRAVNLLFGS
DVPKLVSLLVKELEKTMQKSSRPGTYRLDELQPIEVEQQRIKMEAIERAE
RAEREIKHKKQIDYLNHVTDSIMENMPDIGVTVFGPQVNRDMFKKLTEPA
EALKMQCKDRRVIQVSTDQFEIVNFACKNPMPPDVIEQLDGKELLMCFWK
IDESIGTVPNVLMAYAHELTKERVAPPNDDIPEEHVIPPLITTMKLKVEV
ELKEGETWVEEISSEEEARLHQAKSKAKTKSISHEEAHLAEEEAADLDAE
EEASEEETVMPEPGGDAMGGLPSMPGFELEIEPVDEAGEDEEEVQEIKEE
EPSKPLTRTKTVKMPPIWVPNSRRTHAALIYVFFRGQTSGFLPPDPKPEP
PHVIMAFDASKRKEIMHVIDRHKDDVPLYGFFSSAEPDEAELIATSTDKY
ESSPHSSGDKIVLKVNKVQSNMMLSLVSYGPSYVSPNVTVGKDEALKFFP
EDYKPQEEVVVEVEKKKKKSKRATEINQEMEAAAAAAAAAAAHPSEAPAP
VEAEAHAAEAPAAVEGDAAPAAAEAPPAGDAAPVAPPPAEPAAEGAAPEA
PAPAPAPAPAPEAPAAEEAPHEAPKEEAPAAEAPPEPEAEAPAPAPAEPA
PEPAAEASFLDH
BO28370.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:58:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18130-PA | 706 | CG18130-PA | 1..706 | 1..706 | 3647 | 100 | Plus |
| CG14221-PC | 586 | CG14221-PC | 1..585 | 1..625 | 1457 | 46.8 | Plus |
| CG14221-PB | 542 | CG14221-PB | 1..541 | 45..625 | 1267 | 44.7 | Plus |
| CG3108-PA | 1132 | CG3108-PA | 204..626 | 259..698 | 244 | 27.5 | Plus |
| Tm1-PK | 518 | CG4898-PK | 398..518 | 594..704 | 217 | 55.3 | Plus |
