BO28372.complete Sequence
2104 bp assembled on 2011-07-19
GenBank Submission: KX794473
> BO28372.complete
GAAGTTATCAGTCGACATGGCCAAGAAGAAAAGCGAGGAGCACTCCGGTA
CGGATGCGAACGACAGTGATTACCAGGAGGAGCCGAACTTTGACGATCCG
CCCGGGTTCGTGGACAACATTAGTGATGAAGATCTGTTGGGCGACATGTT
GGCCCAGCGCCCCTCGGAGGCCGATGGCGTCGAGAGTGTGGTGGTAGTGG
ACAATATCCCAAAGGTGGAGCCGGTGCGCCTGGAGAAGCTGAAGTTGGTC
ATCAACAAGCTGTTTTCGAACTACGGAGAAATCGTCAATGTGGTCTATCC
CGTCGACGAGGAGGGCAAAACCAAGGGCTACGCCTTCATGGAGTACAAGC
AGGCCAGACAGGCGGAGGAAGCCGTCAAGAAGCTCAACAATCATCGCCTA
GACAAAAACCACACCTTTGCCGTCAATCTCTTCACCGATTTCCAAAAGTA
CGAAAACATCCCCGAGAAGTGGGAGCCGCCAACCGTGCAGACCTTCAAGG
TGCAGAGCGATCTATACAACTTCATCAATGACCCGGACACTTATGACCAG
TACTGCGTGGCAGCGGAGACCGCTCCCAACTGCGTGCAGGTTGGTTTCTG
GCAAAACGTATTGCCCGAACCCTTTGAGCTGGAGACCCGCGAACGCTTCA
CCGACACCTTCGTCAAGTGGTCGCCCCTGGGTACTTATGTAGTCACCTTC
CACAAACCCGGCGTGGCCATCTGGGGTGGCAGTAGCTTCCAGAAGATTCA
GAAGTTCCCCCATCCTGGTACCCAATTCGTTGAGTTTTCGCCCTGCGAGA
ATTACCTAGTTACTTACGGACCGACACCCACGGGCCAAAAGATCATCATT
TGGGACATTCGCACTGGAGCCGAGAAGCGTTCGTTTGTTGCCGATGGCAT
GTCGGTTCTTTCTATGTTCCGCTGGTCGCACGACGACAAGTTTGTGGCCC
GCATGGGCGAGAATTCGATCCACATCTACGAGACACCCTCTTTCTATCTT
CTGGACCTGAAGTCCATTAAGATTCCCGGCATTCGTGGCTTCTCTTGGTC
CCCCACAGACAACGTGATTGCCTACTGGGTGGAGGAGCAGAACCAAATAC
CCGCCCGCGTTACCCTGATGGAGATCCCCAAGAAGCGTGAGATCCGTAAC
AAGAACCTTTTCCATGTGGCCGATTGCAAGTTACATTGGCAAAAGTCCGG
CGACTATCTGTGCGTTAAGGTAGATCGTTACTCAAAGTTGAAGAAGGATA
AGAAGGACCTGGACGTCAAGTTTCTGGGCATGTTCTACAACTTTGAGATC
TTCCACATGCGCGAGAAGGAGATTCCCGTCGACTCTGTGGAGATTCGTGA
GCTTATTTTGGCCTTTGCCTGGGAGCCCGTCGGCAACAAGTTCTCCATCA
TTCACGGCGAGACCAACTCGTCGAATGTGAGCTTCTACGAGGTGAACAAG
GGCGTTAAGCCCAGCTTGGTGAAGCGTCTAGAAAAGAAGTCATGCACACA
TCTGTTCTGGTCGCCACGCGGTCAGTTTATCGTAATGGCCAACCTCACCA
TGGGTACCTTCGAGTTTGTGGACTCCACCAACGATTACATCATCACGGCA
TCGCCCGATCATTTCCGCGCTTCCGAGGTCGAGTGGGATCCCACTGGACG
CTACGTTGTGACTGGTGTCTCGTCATGGAAGGTGAAGGAGGATACCGGCT
TCAACATGTACACGTTCCAGGGCCGCATCATCAAGCGTACCATTCTCAAG
AACTTTGTGCAGTTCTTGTGGCGCCCGCGTCCTCCCACCCTGCTTAGCGA
GGAGAAGCAGAAGGAGATCAAGAAGAACTTGAAGAAGTACTACGCTGCCT
TCGAACAAAAGGATCGCCTGCGCCTTACCCGTGCCTCCAAGGAGCTGCTC
GAGAAGCGCTCTCAGCTGCGCGAGACCTTTATGGAGTACCGCAACAAGCG
TATTGCCGAGTGGGCGGAGCAGAAGAGTCGTCGCATCATGCTGCGAGGGC
ATGTGGACACAGACAACCTGGAAACTGACGAAGTGGATGAAGAAATTGTT
GAATTTTTAGTCAAGGAAGAAGTCACTCTGCTCGAGGCAAGCTTTCTAGA
CCAT
BO28372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF3-S9-RA | 2073 | CG4878-PA | 1..2070 | 17..2086 | 10155 | 99.4 | Plus |
| eIF3-S9-RB | 2073 | CG4878-PB | 1..2070 | 17..2086 | 10155 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF3-S9-RA | 2565 | CG4878-RA | 133..2202 | 17..2086 | 10155 | 99.4 | Plus |
| eIF3-S9-RB | 2481 | CG4878-RB | 128..2197 | 17..2086 | 10155 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:02:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17537070..17538622 | 448..2000 | 7615 | 99.4 | Plus |
| 2R | 25286936 | 2R | 17536694..17537014 | 130..450 | 1575 | 99.4 | Plus |
| 2R | 25286936 | 2R | 17536465..17536579 | 17..131 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 17538694..17538779 | 2001..2086 | 415 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:02:43 has no hits.
BO28372.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-19 13:05:42 Download gff for
BO28372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF3-S9-RA | 253..2322 | 17..2088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:52 Download gff for
BO28372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF3-S9-RB | 128..2197 | 17..2088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:37 Download gff for
BO28372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF3-S9-RB | 128..2197 | 17..2088 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:37 Download gff for
BO28372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17536465..17536579 | 17..131 | 100 | -> | Plus |
| 2R | 17536696..17537011 | 132..447 | 99 | -> | Plus |
| 2R | 17537070..17538622 | 448..2000 | 99 | -> | Plus |
| 2R | 17538694..17538779 | 2001..2088 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:52 Download gff for
BO28372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13423970..13424084 | 17..131 | 100 | -> | Plus |
| arm_2R | 13424201..13424516 | 132..447 | 99 | -> | Plus |
| arm_2R | 13424575..13426127 | 448..2000 | 99 | -> | Plus |
| arm_2R | 13426199..13426284 | 2001..2088 | 96 | | Plus |
BO28372.pep Sequence
Translation from 16 to 2104
> BO28372.pep
MAKKKSEEHSGTDANDSDYQEEPNFDDPPGFVDNISDEDLLGDMLAQRPS
EADGVESVVVVDNIPKVEPVRLEKLKLVINKLFSNYGEIVNVVYPVDEEG
KTKGYAFMEYKQARQAEEAVKKLNNHRLDKNHTFAVNLFTDFQKYENIPE
KWEPPTVQTFKVQSDLYNFINDPDTYDQYCVAAETAPNCVQVGFWQNVLP
EPFELETRERFTDTFVKWSPLGTYVVTFHKPGVAIWGGSSFQKIQKFPHP
GTQFVEFSPCENYLVTYGPTPTGQKIIIWDIRTGAEKRSFVADGMSVLSM
FRWSHDDKFVARMGENSIHIYETPSFYLLDLKSIKIPGIRGFSWSPTDNV
IAYWVEEQNQIPARVTLMEIPKKREIRNKNLFHVADCKLHWQKSGDYLCV
KVDRYSKLKKDKKDLDVKFLGMFYNFEIFHMREKEIPVDSVEIRELILAF
AWEPVGNKFSIIHGETNSSNVSFYEVNKGVKPSLVKRLEKKSCTHLFWSP
RGQFIVMANLTMGTFEFVDSTNDYIITASPDHFRASEVEWDPTGRYVVTG
VSSWKVKEDTGFNMYTFQGRIIKRTILKNFVQFLWRPRPPTLLSEEKQKE
IKKNLKKYYAAFEQKDRLRLTRASKELLEKRSQLRETFMEYRNKRIAEWA
EQKSRRIMLRGHVDTDNLETDEVDEEIVEFLVKEEVTLLEASFLDH
BO28372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF3-S9-PA | 690 | CG4878-PA | 1..690 | 1..690 | 3667 | 100 | Plus |
| eIF3-S9-PB | 690 | CG4878-PB | 1..690 | 1..690 | 3667 | 100 | Plus |
