BO28373.complete Sequence
1876 bp assembled on 2011-07-18
GenBank Submission: KX798046
> BO28373.complete
GAAGTTATCAGTCGACATGTCCCAGATAAACAATATATTCATTAAGCTGC
GAGCTCGTCTGCGGGAGCGTGATATCAAGTTGTGGGAGGAGCCCTACTAC
TTCGAGGAGGTGGGCAGCATCGAGTCGGAGATGGACCGCCTGGCCAGGGA
CATCAGTGGCGAACTGGGCATCAGTGTGTCGGACTGCAGAATTGCCTTGG
GCGAATTGCAAGATGGTGCCTTGAGGAAGCTGGCGGCTCGCCGAGAGTTC
AATGACACCGGATTGGCCACGTTCAATGTGCGGTGTGTGGACAGCAAGGG
TGGCACCGTGCAAATGCTGGAGATCAAGTGTTCGCTGGGTGGACTGGGCT
CGGATCTGCAAGCTGAGGTGGCCAAGAAGTTGGATATCGTTGATTCCAGT
CATGTGAAATGCATCTCCGGAGGACGCATCATCAATGGGCAGAAGACACT
GGCCTCGCAGGGGCTCAAAACCAATCAGCACCTCATGGTGGTTGTGGGTG
GAACTAATGAAGGTCAGGAGTTGCACGAACGTATCCAAAGGATTCGTGCG
GACTTGGAGTTAGTTGCGGATGCAGATCGCTTTATGGAAATGGAGGATCA
AGATGGACGTCCAATTTTCTTGCCACGCGAGGAAAATCGATCCCTATTGA
TGGCCATGAGCATGTACGAAGTGGCCAGAGTTGCCATGCATAAGGAGAAC
TTCGATGAGGCTCTACTCATCCTACTCGAGGCCGATGAACTCTTCTCCCA
ATGTGACTCAAAGCTCCTGGAAGGAGTGGATAACTATGCCTTAATCAATC
TAGATATTGTTTGGTGCTATCTGCGCCTGAAGAACATCACCCAACTGCCA
GATGCACAGCGACGTTTGGATATTTGCGAGAGGGGCTTTGTCAAGAGCTA
TGGCGAGCAGTTCATCCGATTGTTCTCGATTAAGGGTCCAAGTAGCCCGG
AACGAGCTTTGATCATGAGACTGCACCTGCTCCAAGGTGTGCTCCTCTTT
CACCAAAATCGCCGGGATGAGGCCTACGAAAAACTGGAGGTGGCGACAAA
GGACTTGTATGAGGTCAAGATGAATGACACTGAGCTAAGCACTCTCGTTG
AAATGGGCTATGAGGAATCGGATGCCAGGTTGGCCTTGAGATCCTGTGCG
GGCCAAGTGGATAGGGCCATTCAATATATCCAGGAACGCAGCGAGAGAAT
CAGTGAGGAGCGAAAGAACTCGGCTGCCGAGAGGCAAGTCAACCAAGAGA
TGATTTTCGCCGGTCAAGGAGGAGAATGGGTCAATCCACGCAGCATTATT
AGGCTCATGGAAATGGGCTACGAAAGGCGTTTGGTTGTGGAGGCTCTGAA
GAGGACCAAAAATAATCTCGATCGCAGTTTGGATCTACTGCAGCGTCATT
CAGATGAACTTAGGGCCAATCTGCCGCCCATTCCTCCTGTCGATGAATCG
TTACTTACTACTCTACAGCACCTTGGATTTTCGGAGATTTCCGCTCGAGA
TGCTTTGGAAACTACGGGCAACAGTTTCCATAAATCTCTGAAATTTCTAT
TGAAAAGTTTCCCCAACGAATCGGAATTACTTCATGTTATTGAAACCATG
ACAAAAGTTTTGGAGGTTCAAGAACCTACGAGCTCAACTAATGCGACTGC
AAATAGCACCACCCCACTCGTAAACTTATCCAACAGCAAGGTGAACTTGC
TCCAGACTGTCCTTAGCGAGGCCAAGTCGGAGATTGAGTCCTACAATGCC
TTCAAGAGATTCAACGAGAACCTCGCCGAGAACAACAACCACTACTTAAA
CTTGCCCTTGGATCAGGAGGAGCAAATTCTGATCGAGTATAAACGTTTGC
TCGAGGGCGCAAGCTTTCTAGACCAT
BO28373.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:43:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5111-RA | 1845 | CG5111-PA | 1..1842 | 17..1858 | 9120 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5111-RA | 2005 | CG5111-RA | 88..1931 | 15..1858 | 9130 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:43:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25506362..25508205 | 15..1858 | 9130 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:43:25 has no hits.
BO28373.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-18 15:33:54 Download gff for
BO28373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5111-RA | 90..1931 | 17..1860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:47 Download gff for
BO28373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5111-RA | 90..1931 | 17..1860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:40 Download gff for
BO28373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5111-RA | 90..1931 | 17..1860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:40 Download gff for
BO28373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25506364..25508205 | 17..1860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:47 Download gff for
BO28373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21332086..21333927 | 17..1860 | 99 | | Plus |
BO28373.pep Sequence
Translation from 16 to 1876
> BO28373.pep
MSQINNIFIKLRARLRERDIKLWEEPYYFEEVGSIESEMDRLARDISGEL
GISVSDCRIALGELQDGALRKLAARREFNDTGLATFNVRCVDSKGGTVQM
LEIKCSLGGLGSDLQAEVAKKLDIVDSSHVKCISGGRIINGQKTLASQGL
KTNQHLMVVVGGTNEGQELHERIQRIRADLELVADADRFMEMEDQDGRPI
FLPREENRSLLMAMSMYEVARVAMHKENFDEALLILLEADELFSQCDSKL
LEGVDNYALINLDIVWCYLRLKNITQLPDAQRRLDICERGFVKSYGEQFI
RLFSIKGPSSPERALIMRLHLLQGVLLFHQNRRDEAYEKLEVATKDLYEV
KMNDTELSTLVEMGYEESDARLALRSCAGQVDRAIQYIQERSERISEERK
NSAAERQVNQEMIFAGQGGEWVNPRSIIRLMEMGYERRLVVEALKRTKNN
LDRSLDLLQRHSDELRANLPPIPPVDESLLTTLQHLGFSEISARDALETT
GNSFHKSLKFLLKSFPNESELLHVIETMTKVLEVQEPTSSTNATANSTTP
LVNLSNSKVNLLQTVLSEAKSEIESYNAFKRFNENLAENNNHYLNLPLDQ
EEQILIEYKRLLEGASFLDH
BO28373.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:58:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5111-PA | 614 | CG5111-PA | 1..614 | 1..614 | 3095 | 100 | Plus |
| CG15445-PH | 618 | CG15445-PH | 1..617 | 1..613 | 1367 | 46.5 | Plus |
| CG15445-PG | 618 | CG15445-PG | 1..617 | 1..613 | 1367 | 46.5 | Plus |
| CG15445-PF | 618 | CG15445-PF | 1..617 | 1..613 | 1367 | 46.5 | Plus |
| CG15445-PE | 618 | CG15445-PE | 1..617 | 1..613 | 1367 | 46.5 | Plus |
