BO28381.complete Sequence
1507 bp assembled on 2011-07-19
GenBank Submission: KX797271
> BO28381.complete
GAAGTTATCAGTCGACATGTCCAGCGACGCCAATACGGCCGTGCTGCGCA
ACTGCATCCGCTTGCCGCTGGCGGAGGATGAGCTACTGGAGGTGACGGCC
AAGGCCAAGGATTATGCCATTATGCACGGCGCCGCCATGCGATCGAAGAC
GGCCTTCAGTCCGGACTCGTTGAATTTCGCCCCCTTCGTGCTGGTGCCTT
CCTCGTTTCCGCGCAAGGAGTTCGAAAAGGCGGTGGCCCTACAGCCGATC
ATCAACCGGCTGATGCACAATGTGGCCCACGACGAGGAGTTCATCACGAC
GACGCTGGCGGAGACGATCAAAGTGGACGAGTTCACGGCCAATCTGTTCA
ACATCTATCGCAAGGTGCTGGCGCACGGATTCACCCAGGCATATAGCATC
GGTCTGTTGCGATCCGACTATATGGCACACGTGTCCGAGGGCTGTGCGAT
AAAGCAGGTCGAGATCAACACGGTGGCCTCCAGTTTCGCTGGCATAGCCA
CCCAATTGGTGCCGCAGCAGAAATTCGTACTCAGCGAGCTGGGACATGCG
GATAAGCTGCACAATATGCCGGATAACAATGCACTGGCCGGACTCTGCGA
TGGCATGGTGAAGGCGTGGGACATCTATGCAAAGCCGCAGGCCGTCATTC
TGTTCATCATCGAGGATGTGTCGTACAACATTTGCGACCAGCGGTTCCAC
GAGTTCTACATTCGCGAGACATATCCGCACATCAAGGTGCTGCGCCGCAC
CCTCACCGAGGTCCATCGGGAGGGCAAACTGGGCCAGTCCAAGGAGTTGC
TCCTTGGATCCCAAGAGGTGGCCGTCATCTACTTCCGAGCTGGCTACGAG
CCCGGACACTATCACTCGCAGGCGGATTGGGATGCCCGCTATCTGATGGA
GACCTCGCTGGCCATCAAGTGCCCGTCGATTCACTACCATTTGGCGGGCA
CCAAGAAGGTGCAGCAGGCATTGGCGCAGCCGGCGGTGCTCGAGCGTTTC
ATCAACGATCCGGAGGAGATCAAGGCGGTGGGCAAGATCTTCACGGGTCT
CTACTCGCTGGACGACAACGAGGCGGGCAATGCCAGCTACGAGATGGCGC
TGCGCACTCCGGAGAGATTCGTGCTGAAGCCGCAGCGCGAGGGAGGCGGC
AATAATGTCTACGGCGTGGATATACCAGATGCACTAAAGCGCATGTCACG
CGTGGAGCGCTCCGCCTGGATTCTGATGGATCTGATTCATCCGCCGCTGA
CCAAGGGCTATATGGTGCGGCCCGGTGGCGATATGCCGCCCCAGATCGTG
GACATGGTCTCCGAGCTGGGCATCTTCGGTGTGGTGATCGGAGATGCGGA
GCACATTGTGCACAACTACCAGGCGGGACACATGCTGCGCACAAAGCTCT
CAACCGCCAACGAAGGAGGCGTGGCAGCCGGTCTGGGCGCCCTGGACAGT
CCATATCTGATCGATAGCGATGACGAGGATGAGCAGAAGGCAAGCTTTCT
AGACCAT
BO28381.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:56:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GS-RJ | 1476 | CG6835-PJ | 1..1473 | 17..1489 | 7365 | 100 | Plus |
| GS-RE | 1476 | CG6835-PE | 1..1473 | 17..1489 | 7365 | 100 | Plus |
| CG32495-RG | 1476 | CG32495-PG | 1..1473 | 17..1489 | 7365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:56:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GS-RJ | 1789 | CG6835-RJ | 165..1638 | 16..1489 | 7370 | 100 | Plus |
| GS-RE | 1938 | CG6835-RE | 314..1787 | 16..1489 | 7370 | 100 | Plus |
| CG32495-RG | 1938 | CG32495-RG | 314..1787 | 16..1489 | 7370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:56:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17897691..17898075 | 805..1189 | 1925 | 100 | Plus |
| X | 23542271 | X | 17905113..17905497 | 805..1189 | 1925 | 100 | Plus |
| X | 23542271 | X | 17898151..17898452 | 1188..1489 | 1510 | 100 | Plus |
| X | 23542271 | X | 17905573..17905874 | 1188..1489 | 1510 | 100 | Plus |
| X | 23542271 | X | 17897376..17897614 | 566..804 | 1195 | 100 | Plus |
| X | 23542271 | X | 17904798..17905036 | 566..804 | 1195 | 100 | Plus |
| X | 23542271 | X | 17890461..17890674 | 176..389 | 1070 | 100 | Plus |
| X | 23542271 | X | 17900616..17900829 | 176..389 | 1070 | 100 | Plus |
| X | 23542271 | X | 17889990..17890149 | 16..175 | 800 | 100 | Plus |
| X | 23542271 | X | 17900145..17900304 | 16..175 | 800 | 100 | Plus |
| X | 23542271 | X | 17903945..17904081 | 386..522 | 685 | 100 | Plus |
| X | 23542271 | X | 17896525..17896661 | 386..522 | 685 | 100 | Plus |
| U | 3151297 | U | 1396054..1396190 | 386..522 | 685 | 100 | Plus |
| U | 3151297 | U | 1406393..1406529 | 386..522 | 685 | 100 | Plus |
| X | 23542271 | X | 17897188..17897230 | 523..565 | 215 | 100 | Plus |
| X | 23542271 | X | 17904610..17904652 | 523..565 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:56:39 has no hits.
BO28381.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-19 10:53:19 Download gff for
BO28381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GS-RE | 315..1787 | 17..1491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:38 Download gff for
BO28381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GS-RJ | 166..1638 | 17..1491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:31 Download gff for
BO28381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32495-RG | 315..1787 | 17..1491 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:31 Download gff for
BO28381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17905575..17905874 | 1190..1491 | 99 | | Plus |
| X | 17905113..17905497 | 805..1189 | 100 | -> | Plus |
| X | 17900146..17900304 | 17..175 | 100 | -> | Plus |
| X | 17900616..17900828 | 176..388 | 100 | -> | Plus |
| X | 17903948..17904081 | 389..522 | 100 | -> | Plus |
| X | 17904610..17904652 | 523..565 | 100 | -> | Plus |
| X | 17904798..17905036 | 566..804 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:38 Download gff for
BO28381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17799608..17799907 | 1190..1491 | 99 | | Plus |
| arm_X | 17798831..17799069 | 566..804 | 100 | -> | Plus |
| arm_X | 17799146..17799530 | 805..1189 | 100 | -> | Plus |
| arm_X | 17794179..17794337 | 17..175 | 100 | -> | Plus |
| arm_X | 17794649..17794861 | 176..388 | 100 | -> | Plus |
| arm_X | 17797981..17798114 | 389..522 | 100 | -> | Plus |
| arm_X | 17798643..17798685 | 523..565 | 100 | -> | Plus |
BO28381.pep Sequence
Translation from 16 to 1507
> BO28381.pep
MSSDANTAVLRNCIRLPLAEDELLEVTAKAKDYAIMHGAAMRSKTAFSPD
SLNFAPFVLVPSSFPRKEFEKAVALQPIINRLMHNVAHDEEFITTTLAET
IKVDEFTANLFNIYRKVLAHGFTQAYSIGLLRSDYMAHVSEGCAIKQVEI
NTVASSFAGIATQLVPQQKFVLSELGHADKLHNMPDNNALAGLCDGMVKA
WDIYAKPQAVILFIIEDVSYNICDQRFHEFYIRETYPHIKVLRRTLTEVH
REGKLGQSKELLLGSQEVAVIYFRAGYEPGHYHSQADWDARYLMETSLAI
KCPSIHYHLAGTKKVQQALAQPAVLERFINDPEEIKAVGKIFTGLYSLDD
NEAGNASYEMALRTPERFVLKPQREGGGNNVYGVDIPDALKRMSRVERSA
WILMDLIHPPLTKGYMVRPGGDMPPQIVDMVSELGIFGVVIGDAEHIVHN
YQAGHMLRTKLSTANEGGVAAGLGALDSPYLIDSDDEDEQKASFLDH
BO28381.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:01:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GS-PJ | 491 | CG6835-PJ | 1..491 | 1..491 | 2542 | 100 | Plus |
| GS-PE | 491 | CG6835-PE | 1..491 | 1..491 | 2542 | 100 | Plus |
| CG32495-PG | 491 | CG32495-PG | 1..491 | 1..491 | 2542 | 100 | Plus |
| CG32495-PB | 491 | CG32495-PB | 1..491 | 1..491 | 2542 | 100 | Plus |
| GS-PI | 562 | CG6835-PI | 214..562 | 143..491 | 1748 | 95.7 | Plus |
