BO28383.complete Sequence
505 bp assembled on 2011-06-27
GenBank Submission: KX796992
> BO28383.complete
GAAGTTATCAGTCGACATGGTGTACCCAGTGCGGAACAAGGACGATCTTG
ACCAGCAGCTAATCCTCGCCGAGGACAAGCTGGTGGTAATTGATTTTTAT
GCAGACTGGTGCGGACCTTGCAAGATAATAGCACCCAAGCTGGACGAACT
GGCGCAGCAGTACTCGGACCGTGTCGTCGTACTCAAGGTGAACGTGGACG
AGAACGAGGACATTACGGTCGAATACAATGTGAATAGCATGCCCACTTTT
GTGTTCATCAAGGGCGGCAATGTGCTGGAGCTCTTCGTTGGCTGCAATTC
CGATAAGCTGGCCAAATTGATGGAGAAGCATGCCGGCGTTTATACCGATG
AAGCGGCCGACGTTAAGGCCGTCCATATCGATGGCGAATGCATTGTCGAT
CTGACCGCCGAGTCCAGTGAAAGCGACAACGACAACAACAACGTTAATGA
GGTGTCCGCCCACGACGAGAATGCCGTTCTGGAGCACGCAAGCTTTCTAG
ACCAT
BO28383.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:54:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TrxT-RB | 474 | CG3315-PB | 1..471 | 17..487 | 2355 | 100 | Plus |
TrxT-RA | 474 | CG3315-PA | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TrxT-RB | 1104 | CG3315-RB | 44..515 | 16..487 | 2360 | 100 | Plus |
TrxT-RA | 1108 | CG3315-RA | 44..515 | 16..487 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5311241..5311712 | 487..16 | 2360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:54:53 has no hits.
BO28383.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:25:13 Download gff for
BO28383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TrxT-RA | 45..515 | 17..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:35 Download gff for
BO28383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TrxT-RA | 45..515 | 17..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:34 Download gff for
BO28383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TrxT-RA | 45..515 | 17..489 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:34 Download gff for
BO28383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5311239..5311711 | 17..489 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:35 Download gff for
BO28383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5205272..5205744 | 17..489 | 99 | | Minus |
BO28383.pep Sequence
Translation from 16 to 505
> BO28383.pep
MVYPVRNKDDLDQQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAQQYS
DRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAK
LMEKHAGVYTDEAADVKAVHIDGECIVDLTAESSESDNDNNNVNEVSAHD
ENAVLEHASFLDH
BO28383.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:46:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TrxT-PB | 157 | CG3315-PB | 1..157 | 1..157 | 817 | 100 | Plus |
TrxT-PA | 157 | CG3315-PA | 1..157 | 1..157 | 817 | 100 | Plus |
Trx-2-PA | 106 | CG31884-PA | 1..103 | 1..103 | 324 | 59.2 | Plus |
Trx-2-PB | 106 | CG31884-PB | 1..103 | 1..103 | 324 | 59.2 | Plus |
dhd-PB | 107 | CG4193-PB | 4..103 | 5..104 | 251 | 46 | Plus |