Clone BO28383 Report

Search the DGRC for BO28383

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:283
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptTrxT-RA
Protein status:BO28383.pep: Imported from assembly
Sequenced Size:505

Clone Sequence Records

BO28383.complete Sequence

505 bp assembled on 2011-06-27

GenBank Submission: KX796992

> BO28383.complete
GAAGTTATCAGTCGACATGGTGTACCCAGTGCGGAACAAGGACGATCTTG
ACCAGCAGCTAATCCTCGCCGAGGACAAGCTGGTGGTAATTGATTTTTAT
GCAGACTGGTGCGGACCTTGCAAGATAATAGCACCCAAGCTGGACGAACT
GGCGCAGCAGTACTCGGACCGTGTCGTCGTACTCAAGGTGAACGTGGACG
AGAACGAGGACATTACGGTCGAATACAATGTGAATAGCATGCCCACTTTT
GTGTTCATCAAGGGCGGCAATGTGCTGGAGCTCTTCGTTGGCTGCAATTC
CGATAAGCTGGCCAAATTGATGGAGAAGCATGCCGGCGTTTATACCGATG
AAGCGGCCGACGTTAAGGCCGTCCATATCGATGGCGAATGCATTGTCGAT
CTGACCGCCGAGTCCAGTGAAAGCGACAACGACAACAACAACGTTAATGA
GGTGTCCGCCCACGACGAGAATGCCGTTCTGGAGCACGCAAGCTTTCTAG
ACCAT

BO28383.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
TrxT-RB 474 CG3315-PB 1..471 17..487 2355 100 Plus
TrxT-RA 474 CG3315-PA 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
TrxT-RB 1104 CG3315-RB 44..515 16..487 2360 100 Plus
TrxT-RA 1108 CG3315-RA 44..515 16..487 2360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5311241..5311712 487..16 2360 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:54:53 has no hits.

BO28383.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:25:13 Download gff for BO28383.complete
Subject Subject Range Query Range Percent Splice Strand
TrxT-RA 45..515 17..489 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:35 Download gff for BO28383.complete
Subject Subject Range Query Range Percent Splice Strand
TrxT-RA 45..515 17..489 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:34 Download gff for BO28383.complete
Subject Subject Range Query Range Percent Splice Strand
TrxT-RA 45..515 17..489 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:34 Download gff for BO28383.complete
Subject Subject Range Query Range Percent Splice Strand
X 5311239..5311711 17..489 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:35 Download gff for BO28383.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5205272..5205744 17..489 99   Minus

BO28383.pep Sequence

Translation from 16 to 505

> BO28383.pep
MVYPVRNKDDLDQQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAQQYS
DRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAK
LMEKHAGVYTDEAADVKAVHIDGECIVDLTAESSESDNDNNNVNEVSAHD
ENAVLEHASFLDH

BO28383.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
TrxT-PB 157 CG3315-PB 1..157 1..157 817 100 Plus
TrxT-PA 157 CG3315-PA 1..157 1..157 817 100 Plus
Trx-2-PA 106 CG31884-PA 1..103 1..103 324 59.2 Plus
Trx-2-PB 106 CG31884-PB 1..103 1..103 324 59.2 Plus
dhd-PB 107 CG4193-PB 4..103 5..104 251 46 Plus