BO28384.complete Sequence
595 bp assembled on 2011-06-27
GenBank Submission: KX799727
> BO28384.complete
GAAGTTATCAGTCGACATGTCTGTTTCCAACAAGGCGGAACCCAAATCAC
CAGTTAAAAAGGTCAACATGGACACAACGACTGCAATCCCAGAGGGCACC
GCTTTATGCCGCTACTGCGGACGCCACTTCAACACGGATCGTCTGGCGAA
GCACGAGGAGGTGTGCCAGCGCATGCTGACCACCAAACGCAAGATATTCG
ATGCCTCCAAGCAGCGGATCGAGGGCACCGAGGCCGCGGCGTTCAATATG
AAGTCGAAGGGCAATCGCAACCGTTCAACTTACAGTAGTGCTGCCCAGCA
GAAGGGTCTGACCACTGGAGTGAAGAAGAACAACTGGCGTAAGAAGCACG
AGGACTTCATTCAGTCGATTAGAGCGGCCAAGCAGGTGAAGGCGCACTTG
GCGCGCGGCGGCAAGTTGAGCGACCTGCCACCACCGCCACCTTCGGAGAA
TCCAGACTATGTCCAGTGTCCCCACTGTGGTCGCCGATTCAACGAACAGG
CTGCGGAGCGTCATATCCCCAAGTGCGTTAACATGGTGCACAACAAGCCC
CGTAACGGTCCGCCGGCCAAGAGGCGTGCAAGCTTTCTAGACCAT
BO28384.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:55:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42675-RD | 564 | CG42675-PD | 1..561 | 17..577 | 2805 | 100 | Plus |
| CG42675-RG | 1284 | CG42675-PG | 738..1281 | 34..577 | 2720 | 100 | Plus |
| CG42675-RF | 1152 | CG42675-PF | 606..1149 | 34..577 | 2720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42675-RD | 644 | CG42675-RD | 19..579 | 17..577 | 2805 | 100 | Plus |
| CG42675-RG | 1448 | CG42675-RG | 840..1383 | 34..577 | 2720 | 100 | Plus |
| CG42675-RF | 1834 | CG42675-RF | 1226..1769 | 34..577 | 2720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5818248..5818755 | 70..577 | 2540 | 100 | Plus |
| 3R | 32079331 | 3R | 5818134..5818188 | 17..71 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:55:20 has no hits.
BO28384.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:25:14 Download gff for
BO28384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42675-RD | 19..579 | 17..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:45 Download gff for
BO28384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42675-RD | 19..579 | 17..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:46 Download gff for
BO28384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42675-RD | 19..579 | 17..579 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:46 Download gff for
BO28384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5818134..5818187 | 17..70 | 100 | -> | Plus |
| 3R | 5818249..5818755 | 71..579 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:45 Download gff for
BO28384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1643856..1643909 | 17..70 | 100 | -> | Plus |
| arm_3R | 1643971..1644477 | 71..579 | 99 | | Plus |
BO28384.pep Sequence
Translation from 16 to 595
> BO28384.pep
MSVSNKAEPKSPVKKVNMDTTTAIPEGTALCRYCGRHFNTDRLAKHEEVC
QRMLTTKRKIFDASKQRIEGTEAAAFNMKSKGNRNRSTYSSAAQQKGLTT
GVKKNNWRKKHEDFIQSIRAAKQVKAHLARGGKLSDLPPPPPSENPDYVQ
CPHCGRRFNEQAAERHIPKCVNMVHNKPRNGPPAKRRASFLDH
BO28384.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42675-PD | 187 | CG10999-PC | 1..187 | 1..187 | 1004 | 100 | Plus |
| CG42675-PF | 383 | CG42675-PF | 202..383 | 6..187 | 978 | 99.5 | Plus |
| CG42675-PC | 383 | CG10999-PB | 202..383 | 6..187 | 978 | 99.5 | Plus |
| CG42675-PB | 383 | CG10999-PA | 202..383 | 6..187 | 978 | 99.5 | Plus |
| CG42675-PE | 412 | CG42675-PE | 231..412 | 6..187 | 978 | 99.5 | Plus |
