BO28385.complete Sequence
2698 bp assembled on 2011-07-18
GenBank Submission: KX794794
> BO28385.complete
GAAGTTATCAGTCGACATGGGCTTACGTAGGTTTATTCGCAAGCATTTTG
GCAGTAAAAATTCATTGGGCAGTGCAGTTAAAATTATAAAAAGCATAGAG
AACGACGAGTTGAAAAATAAACGTTTAAATGGCACTTTGGCCAGCACGGC
AGCAATTGCAACACCCATCAAAGGAGTGGCCACCAAATCCGGAGCCACAA
ACAAGCTGCAACAATCGGCAAAAACTAAATCAACCGCGAGTATCAAAAGT
CCAGCAATTGTCGGCGTTTCCGAGGAATCCCTGCGCTCTGGCGTGGATCA
AACCGAACTTCAGGAGCTGAACAATGGGCAATCTGCTACCGGTTGTCCGA
CGCCGCCGATGGCGCGGGACTCAAAGCGTACGTCCATTGGAAATGAGTTA
CCCTGTGAGACGGAGGCCAAGTTGAAGAGATGCGAGGACCAGCAGGATCC
ACAAGCATCCACGACGGCATCACCCCTACCGATGATCAATCCACAGGAAC
AAGAAGCCAGTGGCCAGGTCAAAGAAGCAACAATCACCACTGCAAATGAG
CCAAACGCCTTGTCCTTGCCCGACGAAATCAGCAATTCGGTCAGCTCGAC
GACGATGCTGGCCACGCCCCGCGTAGACATAGCCGCCCAGTATCCCGTCC
TGAAACCATTCACGGAGAACGGAGAGCTGGACTGTGCACGACTGGCCAAA
TTCTTCCAGGACACCCAGTTCGAGAGGAAGGAGGAGCAACGCCAGATTCT
GGGCCTCTCCGTAATGGTGCAGTTCATGTCCAAAGAGCTGGATGCGGTTG
CCTGCAAGGAGAACAAACATCAATGCGCCCGGACCAAGGGAACGCTAGAG
AAGACTATATTGCTGCTACAGCATACGCAAAAGGATTGCGAGCGACTACG
CGAGGATTTGGAGGACAAGGGCCTGGAGTGGATTCAGCGGCAGCAGGAGA
AGGAATATCTGCATCGCACTGAACTGAAGCAAGCTGAAGAGAAATTAATG
GAGGTGCAATTGCGTGCCAAGTTAAAGTTCTGCGAATTAGAGTCCCAACT
GCGTGCCAAGGACGAGGAGAGCAAACAGGCACAGGAGGCCTACAGAATGG
AGGTCTCCCACAAACTTGCACTGAAGCAGGAACATCTGCGCACTGCCGAG
CAGAAAATCCAGGAACTGCAGACACGTCTTCAGCAGGTGGAGACCGAGGA
GCAGGGGCACCGCGAGGAGCTGATCCGCAAGGAGAACATTCACACCGCCC
GGCTGGCCGAGGCCAATCAGCGGGAGCAGGATCTGATCGACCGGGTCAAG
AGCCTGACCAAGGAGCTGAACACCCTGAAGGCCAACAAGGAGCATAACGA
ACGCGATTTGAGGGATCGGCTGGCGCTGTCCCAGGACGAAATCTCTGTGC
TGCGCACATCCTCACAGCGCCGCAGCCCCTGCACCAGTTTGCCGGACAAC
GCGTCCGCCGAACTCAACCGCTTGACCAGCGAGGCAGACAGCTTGCGCTG
TGTGCTTGAGCTCAAGCAGGCGGAGATTTCCGCCCTTAGCAAGGCCAAGG
CGGATCTGATTCATGAAAGCGAGGAGCGGCTTAAACTGAGTAACCGCGTG
GCCCTTTTGGAGGCCCAAAACGAAATGCTGCGCACCGAACTGGAGGCCAA
GACCGAAAAGGAGAAGGAAATCCAGCAAAAGATGGAGGAACTTCAGAAGG
CCTACAAATACGAGAGCATTAAACGCACGCGGCTGACGTATGACAAAGAG
GAGCTACAGTACCACCTTAAGCAGAGATCATTGCAGCTCCAGTCGGCTGA
GTCAAAGTTGCAAGATCTTTCCACTGGTTCCCACGATAACAGCCTATCTA
GCCACAGCCGATGCAGCCTGGGTCGCAGTGGCCTGGAGATCGCCGTGACC
ACCTCCTCGCCCACTTCCCCAGTGATGAAGGGAATGATTGAACGGAATGA
TTCCGTCAGCTGGACGCTAGAGATCGAAGATGAGTCGTTCAAGGGTAACA
CTTCAAAGATTGTGCGCAGGGCGGGGTCACTGCGAAGCAACAACGAGCGG
TGCCCCATCCAGCGGCGACAGACATTGACAAGCAATGGACACTCCAATGG
ATCGGCCACAAATGGCGGCTCTTCCCCCGCTCATCCTAATCCCCTTAGCC
AGAGCATGTCGGCCACAGCCCTTCTGAGAAGCAGCAGTAATTCCGGGGAG
TCAGAGGGTCGTCCTTTGTCCCGGGCTCGCTCAAAATCGATGTGCATCAA
AGCGTCCGCCACCAGTTCGGCGGTGTGCGAATCGTCTGGCCAAAGGAAGA
AACCACAAGACGAGTTGAGTCTGGCCGACTGGCCCGAGGATATTCCCCTG
TGCTCCAGTTCACCACAAGCGCCGGGAATAGAGATGCGTCCGCGCAGCTC
CACCATGAAGCTAATGTCCAGCGAGGCAAAGAAGTTCCAGGAAATCCAGG
AGTCCGCCGGCGAGGCCATGGTCTCCGGTGCTAACTCGGAGGACGAGAGC
TGTTCGGCCTCATCCGAGGACATAATGCGCAGCTCTTCCGCCTCCAGCAC
CGCATCGGGTGGATCCCTATCCAAGAGGCCAAAGCAACCACCATCCCGCA
TGTCCATCGAGGAGGCTCTGCCCTGCACCCCCATGGAGGTAAGCTGGTCA
GAAGACGCTGCCGATGCCAACGGACTGGCAGCAAGCTTTCTAGACCAT
BO28385.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:55:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| toc-RC | 2667 | CG9660-PC | 1..2664 | 17..2680 | 13185 | 99.7 | Plus |
| toc-RI | 2811 | CG9660-PI | 245..2808 | 117..2680 | 12700 | 99.7 | Plus |
| toc-RH | 2982 | CG9660-PH | 272..2835 | 117..2680 | 12700 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:55:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| toc-RC | 3121 | CG9660-RC | 137..2800 | 17..2680 | 13185 | 99.7 | Plus |
| toc-RI | 3266 | CG9660-RI | 382..2945 | 117..2680 | 12700 | 99.7 | Plus |
| toc-RH | 4787 | CG9660-RH | 852..3415 | 117..2680 | 12700 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:55:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3069717..3070731 | 2680..1666 | 5060 | 99.9 | Minus |
| 2L | 23513712 | 2L | 3070822..3071506 | 1666..982 | 3365 | 99.4 | Minus |
| 2L | 23513712 | 2L | 3080994..3081269 | 550..275 | 1380 | 100 | Minus |
| 2L | 23513712 | 2L | 3080651..3080889 | 787..549 | 1150 | 98.7 | Minus |
| 2L | 23513712 | 2L | 3071569..3071766 | 983..786 | 990 | 100 | Minus |
| 2L | 23513712 | 2L | 3094217..3094375 | 275..117 | 795 | 100 | Minus |
| 2L | 23513712 | 2L | 3094460..3094559 | 116..17 | 485 | 99 | Minus |
Blast to na_te.dros performed 2014-11-26 21:55:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Penelope | 4158 | Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). | 569..710 | 84..230 | 122 | 61 | Plus |
| Penelope | 804 | Penelope 804bp Derived from AF418572 (AF418572) (Rel. 70, Last updated, Version 3). | 124..265 | 84..230 | 122 | 61 | Plus |
BO28385.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-18 16:37:18 Download gff for
BO28385.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toc-RC | 137..2800 | 17..2682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:05 Download gff for
BO28385.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toc-RC | 137..2800 | 17..2682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:05 Download gff for
BO28385.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toc-RC | 137..2800 | 17..2682 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:05 Download gff for
BO28385.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3094460..3094559 | 17..116 | 99 | | Minus |
| 2L | 3069713..3070731 | 1666..2682 | 99 | <- | Minus |
| 2L | 3070823..3071504 | 984..1665 | 99 | <- | Minus |
| 2L | 3071569..3071764 | 788..983 | 100 | <- | Minus |
| 2L | 3080651..3080887 | 551..787 | 98 | <- | Minus |
| 2L | 3080994..3081268 | 276..550 | 100 | <- | Minus |
| 2L | 3094217..3094375 | 117..275 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:05 Download gff for
BO28385.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3069713..3070731 | 1666..2682 | 99 | <- | Minus |
| arm_2L | 3070823..3071504 | 984..1665 | 99 | <- | Minus |
| arm_2L | 3071569..3071764 | 788..983 | 100 | <- | Minus |
| arm_2L | 3080651..3080887 | 551..787 | 98 | <- | Minus |
| arm_2L | 3080994..3081268 | 276..550 | 100 | <- | Minus |
| arm_2L | 3094217..3094375 | 117..275 | 100 | <- | Minus |
| arm_2L | 3094460..3094559 | 17..116 | 99 | | Minus |
BO28385.pep Sequence
Translation from 16 to 2698
> BO28385.pep
MGLRRFIRKHFGSKNSLGSAVKIIKSIENDELKNKRLNGTLASTAAIATP
IKGVATKSGATNKLQQSAKTKSTASIKSPAIVGVSEESLRSGVDQTELQE
LNNGQSATGCPTPPMARDSKRTSIGNELPCETEAKLKRCEDQQDPQASTT
ASPLPMINPQEQEASGQVKEATITTANEPNALSLPDEISNSVSSTTMLAT
PRVDIAAQYPVLKPFTENGELDCARLAKFFQDTQFERKEEQRQILGLSVM
VQFMSKELDAVACKENKHQCARTKGTLEKTILLLQHTQKDCERLREDLED
KGLEWIQRQQEKEYLHRTELKQAEEKLMEVQLRAKLKFCELESQLRAKDE
ESKQAQEAYRMEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHRE
ELIRKENIHTARLAEANQREQDLIDRVKSLTKELNTLKANKEHNERDLRD
RLALSQDEISVLRTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVLELK
QAEISALSKAKADLIHESEERLKLSNRVALLEAQNEMLRTELEAKTEKEK
EIQQKMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESKLQD
LSTGSHDNSLSSHSRCSLGRSGLEIAVTTSSPTSPVMKGMIERNDSVSWT
LEIEDESFKGNTSKIVRRAGSLRSNNERCPIQRRQTLTSNGHSNGSATNG
GSSPAHPNPLSQSMSATALLRSSSNSGESEGRPLSRARSKSMCIKASATS
SAVCESSGQRKKPQDELSLADWPEDIPLCSSSPQAPGIEMRPRSSTMKLM
SSEAKKFQEIQESAGEAMVSGANSEDESCSASSEDIMRSSSASSTASGGS
LSKRPKQPPSRMSIEEALPCTPMEVSWSEDAADANGLAASFLDH
BO28385.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:01:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| toc-PC | 888 | CG9660-PC | 1..888 | 1..888 | 4438 | 100 | Plus |
| toc-PI | 936 | CG9660-PI | 74..936 | 25..888 | 4273 | 99.2 | Plus |
| toc-PH | 993 | CG9660-PH | 91..953 | 34..894 | 4272 | 99.2 | Plus |
| toc-PE | 945 | CG9660-PE | 91..945 | 34..888 | 4270 | 99.9 | Plus |
| toc-PD | 984 | CG9660-PD | 130..984 | 34..888 | 4270 | 99.9 | Plus |
