BO28389.complete Sequence
2773 bp assembled on 2011-07-19
GenBank Submission: KX796334
> BO28389.complete
GAAGTTATCAGTCGACATGTTGGGAGTCGAGAAGCCATATGTGGTAGAGC
CAGCTATGGCCGTAGCGCAGGACTCGTTTGAATTTGGCAGCAACGGCGAT
GGGAGCTCCACCAACAGCCACACAAGCAACGCCAGCTCCAAGGACCTTGG
CAGACTGACTAGTGGCGACGGAGCCCAGAACTTCGCCCAAGACAGCAGTG
CCAACAGCATTGACCAGGACAGCACGGACAACACAAACAGCGACTGCAAT
CCAATCACACTGAACGATCTACTCGGCTTGTGCGGTGCCAGCACTGCCAA
TGAAGTGGTCGGTACTGGCCAGACCCCCTCGACATCAGCGCCGATACTTG
GAGCAGGAGGAGGCGGAAGAGCAAATGGAGTTACAGCCGGCGCAGCAACG
GCAACAGGAGTGGGAGTTGGAGCTGGAGGGACATTACCTGGGCCAGGAGT
TCCATCGATCCAGGGAGGTGGTGGAGGAGGAGTCGTGGGACAACAAACCA
ATGCCTCGTGCAACACCTCAGCGGCTAACCCATCAGCCAGCTTCGGTGGC
AACGGCAGCAGCAGCGACGTCAATAATCTGCTGCTCGCCAGTGCTGCTGC
CGCTGCCGCCGCGGCTGCCGGTGATGGCGCTCAACTGTCCGCCAATGCGG
CAGCCTACGCTCCGCTGACGCCCAGCTCCACTCATTCATCGGCCTCGCCG
GGCACAAAGTCCAATTTTGACTACTTCCAGTTTGAAAATGTTGCACAAAG
TAACCCACTTAAGGCTTTCCAAAGAACAAACATCAGCTTCGATTGCTCTG
CACCCTTATCGCCAAGTACGCCTACATCTATTTACAATCGCTCCTTTCAC
AGTTCACCTTTAGTCAGCGACAGCAGCAACTCGTCCAGCGGCATTGGACT
CTCCATGGACTCCATCAACATGTTCTACAACCAGCAACAACAACAGCAAC
AGCCGGAGCAGCAAGGTTACACCAGTTTGGGCAACTCCATGGGCAGCGGA
TTGGGACTTAGTTTGGCAAACGCTTCCACGCGCTCGAACTCGCCAGAGAG
TCAGAACAGCAGCAATTCAACGACTGAACAAAATCTACTGGACATGATTA
ATTTGCTGTCTGTAAATAGCAACAAAATTCCACATCAACAACAGCAACAA
CAACAGCAGCAGCAGCAACAACAGCAGCAGCAACAACAGAATCAGCAGCA
ATTGCAGGTTCAGCAACAACATCAGTTGCAGCAGCAGTTTGTTAACCTAA
ACAGGAACTACGAGCAACAGATATCTGCCAATTTGGGTAGCCAACAACAT
GGGTTCGAGCACAACGGCGTGGGTGTGGGTGCTTCTAGTAGCGGAAATGA
GAACTGCTTTAGCCAGTATAATCTAGAAAACATCACCAGTGTGGACATGG
AGCTGGCCAAACTGCAGAATTTGCAACGCATCAACACGCTAAAGCTCCTG
CATGCCCAAGCTCAACAAATGCCGCTGATCAACCAGCTCCTGCAGAGCTA
TGCCGGCAACGCCATAGGCAGCGTCGGTGGAAGCAATCTTGGTAACTTGA
TGAGCGCAGGCGGATCATCACTGATGACAGAAATGGCGGGAAACGTTGGC
GGCATTATAACCACCAACGATGGCCACCTGGATCGCGTAGCTAAGTTCTA
TAAGAGTTCGGCTGCCCTGTGCGATGCCACATGCACATGGAGTGGACACC
TGCCGCCGCGTTCGCACCGTATGCTCAACTATTCTCCCAAGGTCTTCCTC
GGCGGGATTCCCTGGGATATTAGTGAGCAGTCGCTCATCCAGATCTTCAA
GCCATTTGGATCTATTAAAGTGGAGTGGCCCGGCAAGGAGCAGCAGGCGG
CTCAGCCCAAGGGTTATGTTTACATAATCTTTGAATCGGACAAGCAGGTC
AAGGCATTACTTTCGGCCTGTGTGCTTCAGGTGGATGATTCTCACTGTGG
TAGGAACTACTTCTTCAAAATCTCTTCGCGGCGTATTAAGTCCAAGGATG
TTGAAGTCATTCCTTGGATTATCGCTGACTCCAATTTTGTGCGATCCAGC
TCCCAGAAACTTGACCCAACGAAAACCGTGTTTGTGGGCGCACTGCATGG
AAAACTGACTGCCGAGGGCTTGGGAAATATAATGGATGATCTTTTCGACG
GCGTGCTGTATGCTGGTATAGATACGGACAAGTACAAGTACCCGATCGGA
TCGGGACGTGTGACATTTAGCAACTTTCGCTCCTACATGAAAGCTGTTTC
GGCCGCCTTTATCGAGATTAGGACCACGAAGTTCACCAAGAAGGTGCAGG
TGGATCCCTACTTGGAGGATGCCCTATGTTCCATATGCGGTGTGCAGCAC
GGTCCCTACTATTGTAGGGAATTATCGTGCTTCCGATACTTCTGCCGCAG
CTGCTGGCAATGGCAGCACAGCTGTGACATCGTCAAAAATCACAAGCCCT
TGACTCGCAACTCCAAGTCGCAGAGCCTGGTTGGCATCGGACCATCTTCG
TCGAATGTTTCGTTACCCTTCTCTGGCCAACGAAGTATCAGGGACAACAG
AATGGGGAACGGTCAGCATCAACAGCACCAGCAGCATCAGTACCAACAGC
AGAAACACCGTCAGCTGCAAGAATACTCGCAGCCCCACAGTCTCAACGTG
ATGGGAAACTCAGGAGCTGCCAATGCCGCTGCTACATCAATGGTAACTCT
TCAGCAGCGGCAAATTCACAAGGTGCGAATACAGCGTCAGCAGCATCAGG
CGATCGCAAGCTTTCTAGACCAT
BO28389.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb-RD | 2742 | CG10868-PD | 1..2739 | 17..2755 | 13635 | 99.9 | Plus |
| orb-RB | 2742 | CG10868-PB | 1..2739 | 17..2755 | 13635 | 99.9 | Plus |
| orb-RG | 2748 | CG10868-PG | 239..2745 | 249..2755 | 12490 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb-RD | 3258 | CG10868-RD | 302..3042 | 15..2755 | 13645 | 99.9 | Plus |
| orb-RB | 4251 | CG10868-RB | 302..3042 | 15..2755 | 13645 | 99.9 | Plus |
| orb-RF | 3079 | CG10868-RF | 321..2877 | 199..2755 | 12740 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23266962..23267680 | 1818..1100 | 3580 | 99.9 | Minus |
| 3R | 32079331 | 3R | 23269122..23269603 | 730..249 | 2410 | 100 | Minus |
| 3R | 32079331 | 3R | 23266280..23266665 | 2385..2000 | 1915 | 99.7 | Minus |
| 3R | 32079331 | 3R | 23265856..23266226 | 2755..2385 | 1840 | 99.7 | Minus |
| 3R | 32079331 | 3R | 23268063..23268297 | 1099..865 | 1175 | 100 | Minus |
| 3R | 32079331 | 3R | 23269751..23269984 | 248..15 | 1155 | 99.6 | Minus |
| 3R | 32079331 | 3R | 23266719..23266901 | 2001..1819 | 915 | 100 | Minus |
| 3R | 32079331 | 3R | 23268384..23268522 | 867..729 | 695 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 22:04:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2731 | 865..1270 | 289 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2600..2902 | 909..1230 | 262 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2642 | 872..1237 | 247 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6766..7125 | 909..1272 | 222 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2536 | 2537..2751 | 217 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6947 | 2534..2673 | 207 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1601 | 2526..2625 | 157 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6944 | 2528..2647 | 152 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1587 | 904..959 | 151 | 76.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1100..1171 | 913..984 | 134 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1583 | 931..999 | 133 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6903 | 865..1001 | 131 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6785 | 930..997 | 128 | 67.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1102 | 933..964 | 124 | 87.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2782..2848 | 906..963 | 116 | 71.6 | Plus |
BO28389.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-19 13:17:16 Download gff for
BO28389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RD | 309..3042 | 22..2757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:48 Download gff for
BO28389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RB | 309..3042 | 22..2757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:25 Download gff for
BO28389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RB | 309..3042 | 22..2757 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:25 Download gff for
BO28389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23266721..23266901 | 1819..1999 | 100 | <- | Minus |
| 3R | 23266280..23266665 | 2000..2385 | 99 | <- | Minus |
| 3R | 23265854..23266225 | 2386..2757 | 99 | <- | Minus |
| 3R | 23266962..23267680 | 1100..1818 | 99 | <- | Minus |
| 3R | 23268063..23268294 | 868..1099 | 100 | <- | Minus |
| 3R | 23268384..23268520 | 731..867 | 100 | <- | Minus |
| 3R | 23269122..23269603 | 249..730 | 100 | <- | Minus |
| 3R | 23269751..23269977 | 22..248 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:48 Download gff for
BO28389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19091576..19091947 | 2386..2757 | 99 | <- | Minus |
| arm_3R | 19092002..19092387 | 2000..2385 | 99 | <- | Minus |
| arm_3R | 19092443..19092623 | 1819..1999 | 100 | <- | Minus |
| arm_3R | 19092684..19093402 | 1100..1818 | 99 | <- | Minus |
| arm_3R | 19093785..19094016 | 868..1099 | 100 | <- | Minus |
| arm_3R | 19094106..19094242 | 731..867 | 100 | <- | Minus |
| arm_3R | 19094844..19095325 | 249..730 | 100 | <- | Minus |
| arm_3R | 19095473..19095699 | 22..248 | 99 | | Minus |
BO28389.pep Sequence
Translation from 16 to 2773
> BO28389.pep
MLGVEKPYVVEPAMAVAQDSFEFGSNGDGSSTNSHTSNASSKDLGRLTSG
DGAQNFAQDSSANSIDQDSTDNTNSDCNPITLNDLLGLCGASTANEVVGT
GQTPSTSAPILGAGGGGRANGVTAGAATATGVGVGAGGTLPGPGVPSIQG
GGGGGVVGQQTNASCNTSAANPSASFGGNGSSSDVNNLLLASAAAAAAAA
AGDGAQLSANAAAYAPLTPSSTHSSASPGTKSNFDYFQFENVAQSNPLKA
FQRTNISFDCSAPLSPSTPTSIYNRSFHSSPLVSDSSNSSSGIGLSMDSI
NMFYNQQQQQQQPEQQGYTSLGNSMGSGLGLSLANASTRSNSPESQNSSN
STTEQNLLDMINLLSVNSNKIPHQQQQQQQQQQQQQQQQQQNQQQLQVQQ
QHQLQQQFVNLNRNYEQQISANLGSQQHGFEHNGVGVGASSSGNENCFSQ
YNLENITSVDMELAKLQNLQRINTLKLLHAQAQQMPLINQLLQSYAGNAI
GSVGGSNLGNLMSAGGSSLMTEMAGNVGGIITTNDGHLDRVAKFYKSSAA
LCDATCTWSGHLPPRSHRMLNYSPKVFLGGIPWDISEQSLIQIFKPFGSI
KVEWPGKEQQAAQPKGYVYIIFESDKQVKALLSACVLQVDDSHCGRNYFF
KISSRRIKSKDVEVIPWIIADSNFVRSSSQKLDPTKTVFVGALHGKLTAE
GLGNIMDDLFDGVLYAGIDTDKYKYPIGSGRVTFSNFRSYMKAVSAAFIE
IRTTKFTKKVQVDPYLEDALCSICGVQHGPYYCRELSCFRYFCRSCWQWQ
HSCDIVKNHKPLTRNSKSQSLVGIGPSSSNVSLPFSGQRSIRDNRMGNGQ
HQQHQQHQYQQQKHRQLQEYSQPHSLNVMGNSGAANAAATSMVTLQQRQI
HKVRIQRQQHQAIASFLDH
BO28389.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:03:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb-PD | 913 | CG10868-PD | 1..913 | 1..913 | 4732 | 100 | Plus |
| orb-PB | 913 | CG10868-PB | 1..913 | 1..913 | 4732 | 100 | Plus |
| orb-PG | 915 | CG10868-PG | 80..915 | 78..913 | 4332 | 99.9 | Plus |
| orb-PA | 915 | CG10868-PA | 80..915 | 78..913 | 4332 | 99.9 | Plus |
| orb-PF | 617 | CG10868-PF | 1..617 | 297..913 | 3226 | 100 | Plus |
