BO28391.complete Sequence
907 bp assembled on 2011-06-29
GenBank Submission: KX798946
> BO28391.complete
GAAGTTATCAGTCGACATGAGATCCCTGGCCAACCAGGAGGATGGCGCCA
TAAAGGACGAGCCGCCGAGCGACGACGAGCCCGCACAGCCCGCCAGAGAT
CGCGTCCCGCCAATTTCCCGCGGAGCAGCGCCCGCTAGCTCATCCTCCGT
ATCCGCGGGCCTGGGCGCAGGCGAGACTGACTTCAAGGAGCGCTACAAGA
ACCTCAAGAAGAAGCTGAAGTTCCTCATCTATGAGAACGAGTACTTCCAG
GATCTATTGCACACCAACCAGCGGCGTCTGCTGAAAGTTTCCCGGGATCG
TACCTTCCTGCTGGACCGTCTGCTGGTGTACGAGAAGCCGGCCAAGGACT
CTAGCGACTCGGATGCCACCGACAGCTCCGATTCGGAGCCAGCTTCTACG
TCCGGCGTTGCCGGCGGATCGCAAACATCCAAGGACGCCATTCGGCGCAA
GCACAAAGACAAGGGGGCACCAGGAATTCCAGGTGTGCCTCCGCACATGC
CCACAGTGGGCGCCCCACGAGGTCGAAGACGAAAAATCCTAACCGGAATG
TTGCCCGCGAACCATGGAATCCCAGCAATTGCTGCGAAAAAACAACTTAC
CGCCACGGTGTCACCTTCGCAGCAGCCACCGCAACTACAGACTGCACCGA
AGGATGTGTCGCCCGGCCTCAGCCAAGCGGAGATTGCCCGCCAGCTGCAG
GAGCGACGACCGACGCCGTTGGAGCTATTGAGTCCGGAATGCACTTCGGC
CACCGTGCCCACAACGATGCTCAGCGATGAAAGCCCCTCTAAGTGTTATC
CCAATGAAAGCCTGCAGCATCTGATGGAGGACGACTCTCACTCGCACGAG
GTGGCCGCCGAGGAGTGCGTGCCCATGGAGTACACAAGTGCAAGCTTTCT
AGACCAT
BO28391.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:34:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18004-RB | 876 | CG18004-PB | 1..873 | 17..889 | 4350 | 99.9 | Plus |
CG18004-RA | 894 | CG18004-PA | 22..891 | 20..889 | 4335 | 99.9 | Plus |
CG18004-RD | 876 | CG18004-PD | 22..873 | 20..889 | 4030 | 97.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:34:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18004-RB | 1168 | CG18004-RB | 225..1097 | 17..889 | 4350 | 99.9 | Plus |
CG18004-RA | 1044 | CG18004-RA | 104..973 | 20..889 | 4335 | 99.9 | Plus |
CG18004-RD | 1026 | CG18004-RD | 104..955 | 20..889 | 4030 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:34:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10885590..10886152 | 233..795 | 2800 | 99.8 | Plus |
2R | 25286936 | 2R | 10885320..10885533 | 20..233 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 10886210..10886304 | 795..889 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:34:07 has no hits.
BO28391.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-29 12:27:15 Download gff for
BO28391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18004-RB | 225..1097 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:14 Download gff for
BO28391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18004-RB | 225..1097 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:14 Download gff for
BO28391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18004-RB | 225..1097 | 17..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:14 Download gff for
BO28391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10885315..10885532 | 17..232 | 99 | -> | Plus |
2R | 10885590..10886152 | 233..795 | 99 | -> | Plus |
2R | 10886211..10886304 | 796..891 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:14 Download gff for
BO28391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6772820..6773037 | 17..232 | 99 | -> | Plus |
arm_2R | 6773095..6773657 | 233..795 | 99 | -> | Plus |
arm_2R | 6773716..6773809 | 796..891 | 97 | | Plus |
BO28391.pep Sequence
Translation from 16 to 907
> BO28391.pep
MRSLANQEDGAIKDEPPSDDEPAQPARDRVPPISRGAAPASSSSVSAGLG
AGETDFKERYKNLKKKLKFLIYENEYFQDLLHTNQRRLLKVSRDRTFLLD
RLLVYEKPAKDSSDSDATDSSDSEPASTSGVAGGSQTSKDAIRRKHKDKG
APGIPGVPPHMPTVGAPRGRRRKILTGMLPANHGIPAIAAKKQLTATVSP
SQQPPQLQTAPKDVSPGLSQAEIARQLQERRPTPLELLSPECTSATVPTT
MLSDESPSKCYPNESLQHLMEDDSHSHEVAAEECVPMEYTSASFLDH
BO28391.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18004-PB | 291 | CG18004-PB | 1..291 | 1..291 | 1499 | 100 | Plus |
CG18004-PA | 297 | CG18004-PA | 8..297 | 2..291 | 1494 | 100 | Plus |
CG18004-PD | 291 | CG18004-PD | 8..291 | 2..291 | 1443 | 97.9 | Plus |