Clone BO28391 Report

Search the DGRC for BO28391

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:283
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG18004-RB
Protein status:BO28391.pep: Imported from assembly
Sequenced Size:907

Clone Sequence Records

BO28391.complete Sequence

907 bp assembled on 2011-06-29

GenBank Submission: KX798946

> BO28391.complete
GAAGTTATCAGTCGACATGAGATCCCTGGCCAACCAGGAGGATGGCGCCA
TAAAGGACGAGCCGCCGAGCGACGACGAGCCCGCACAGCCCGCCAGAGAT
CGCGTCCCGCCAATTTCCCGCGGAGCAGCGCCCGCTAGCTCATCCTCCGT
ATCCGCGGGCCTGGGCGCAGGCGAGACTGACTTCAAGGAGCGCTACAAGA
ACCTCAAGAAGAAGCTGAAGTTCCTCATCTATGAGAACGAGTACTTCCAG
GATCTATTGCACACCAACCAGCGGCGTCTGCTGAAAGTTTCCCGGGATCG
TACCTTCCTGCTGGACCGTCTGCTGGTGTACGAGAAGCCGGCCAAGGACT
CTAGCGACTCGGATGCCACCGACAGCTCCGATTCGGAGCCAGCTTCTACG
TCCGGCGTTGCCGGCGGATCGCAAACATCCAAGGACGCCATTCGGCGCAA
GCACAAAGACAAGGGGGCACCAGGAATTCCAGGTGTGCCTCCGCACATGC
CCACAGTGGGCGCCCCACGAGGTCGAAGACGAAAAATCCTAACCGGAATG
TTGCCCGCGAACCATGGAATCCCAGCAATTGCTGCGAAAAAACAACTTAC
CGCCACGGTGTCACCTTCGCAGCAGCCACCGCAACTACAGACTGCACCGA
AGGATGTGTCGCCCGGCCTCAGCCAAGCGGAGATTGCCCGCCAGCTGCAG
GAGCGACGACCGACGCCGTTGGAGCTATTGAGTCCGGAATGCACTTCGGC
CACCGTGCCCACAACGATGCTCAGCGATGAAAGCCCCTCTAAGTGTTATC
CCAATGAAAGCCTGCAGCATCTGATGGAGGACGACTCTCACTCGCACGAG
GTGGCCGCCGAGGAGTGCGTGCCCATGGAGTACACAAGTGCAAGCTTTCT
AGACCAT

BO28391.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG18004-RB 876 CG18004-PB 1..873 17..889 4350 99.9 Plus
CG18004-RA 894 CG18004-PA 22..891 20..889 4335 99.9 Plus
CG18004-RD 876 CG18004-PD 22..873 20..889 4030 97.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG18004-RB 1168 CG18004-RB 225..1097 17..889 4350 99.9 Plus
CG18004-RA 1044 CG18004-RA 104..973 20..889 4335 99.9 Plus
CG18004-RD 1026 CG18004-RD 104..955 20..889 4030 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10885590..10886152 233..795 2800 99.8 Plus
2R 25286936 2R 10885320..10885533 20..233 1070 100 Plus
2R 25286936 2R 10886210..10886304 795..889 475 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:34:07 has no hits.

BO28391.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-29 12:27:15 Download gff for BO28391.complete
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 225..1097 17..891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:14 Download gff for BO28391.complete
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 225..1097 17..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:14 Download gff for BO28391.complete
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 225..1097 17..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:14 Download gff for BO28391.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10885315..10885532 17..232 99 -> Plus
2R 10885590..10886152 233..795 99 -> Plus
2R 10886211..10886304 796..891 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:14 Download gff for BO28391.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6772820..6773037 17..232 99 -> Plus
arm_2R 6773095..6773657 233..795 99 -> Plus
arm_2R 6773716..6773809 796..891 97   Plus

BO28391.pep Sequence

Translation from 16 to 907

> BO28391.pep
MRSLANQEDGAIKDEPPSDDEPAQPARDRVPPISRGAAPASSSSVSAGLG
AGETDFKERYKNLKKKLKFLIYENEYFQDLLHTNQRRLLKVSRDRTFLLD
RLLVYEKPAKDSSDSDATDSSDSEPASTSGVAGGSQTSKDAIRRKHKDKG
APGIPGVPPHMPTVGAPRGRRRKILTGMLPANHGIPAIAAKKQLTATVSP
SQQPPQLQTAPKDVSPGLSQAEIARQLQERRPTPLELLSPECTSATVPTT
MLSDESPSKCYPNESLQHLMEDDSHSHEVAAEECVPMEYTSASFLDH

BO28391.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG18004-PB 291 CG18004-PB 1..291 1..291 1499 100 Plus
CG18004-PA 297 CG18004-PA 8..297 2..291 1494 100 Plus
CG18004-PD 291 CG18004-PD 8..291 2..291 1443 97.9 Plus