BO28392.complete Sequence
1459 bp assembled on 2011-07-19
GenBank Submission: KX798429
> BO28392.complete
GAAGTTATCAGTCGACATGCCTACCACAATCAAGCGGCACAGTACAACCA
TTGTAATCAAATCATCCATTTCAGGAACCACCAACTCCCGTCAATCTCCA
CCAGCGTCGTCGGCGGAGGTGTCTTCAAGTGCAGCCGACAATTCCATGCA
CAGTGACGAGCGGTCCACGCCAAATGCAACGATAGATGCGGAATTCGAAC
CCTCATCCCTGTCGCTGGCTGAGCGACTGGCCTTCTTCAGCAATCTGTGC
GAGAGCGGCGGAGGAGGTGGGAGTACCAGTGCCGGTGGAAGGTACCGCAG
TCGCACCAGCAGCTATTCAAGGAGTCCGCCCGGCGATCGCACCACTCCCA
GGAGCAGCACCACCGCCAGCAGTGTCAGTATGACGCCCACGCCCATGGAT
TACTCTCCGATTCCCCACGACAAGGAGCCATCTAGTCTCACGCTGGAGAG
CATCATCGAGCCCGAGCAGGAGGAGGTCAAGGAGCAGGTGGACCAGGATG
AGGTCAAGTTGAGGAAGAAGGAGCCAGTCCAGAGGGAATCTTCCCAGCAC
AATGGCTTCCACGTGCTGACCAGGTCCGCCACCGAACCGCCGTCGTCCAC
CTCGCCCCTGCGCATCAGCATACGGACTGTGGGAAAGCTAGTCCTGCCCG
ATACCTTCCGCGGCGATCGCAACAATAACAGCAGTAGTAGAAGTGGGAGC
AACAGCTGGAGCAACACTTGCATGGTCAAGCTGCAGAGCTTGGAGCCCGT
TAGCCTGTCCGTTCATTCGCGCACCATTGGTAAGGTTAAGTCGCCATTCA
TTGAAAAGCAGCAGGAGAAACCACACACCGAGAAGCTAGCGAACGGAACC
AGCGACAGTGGCTCCGATTCGGGCAAGGAGAACTGCGCCTCCAACGAGCA
GGAACATCTGCAGCACCAGCAGTCGCAGGACGAGGATCGAGCTCCGCCCA
GGGTGTCCGAGATGCGGAGGAAAATCAGCCGACTGGTGCAACAACAGCAG
CCGCAACCACAGCCCGTCAATCGGCGGCACACCACCGAGATCACCTCCGT
GACCGTTGGAACGCGTTCGCCCAGTGTGGACGATCGCTTTGCCAAGTACT
TTGGTGTTAAGGAGAGCTGCAACAGCACGACCACCGTGCATAAAACGCAA
TCGCTGCCACCCAGCCAAGTTGAGGCCACCAATGCGCACGTGAAACTACC
GCAGATCACTACCGTGGTTTCCAAACGGCGCGAGCTGCTCAAGAGGACGC
GACCCCTGTCCATGGATCACTACTCCAGCGGCTGCACCAGTCCCACAGCC
ATGCCAAGTCCCAAGAGAGCACATTCGCCCGTCGGCCGGCGGAAGGCCGC
CATTTCCAGCATCGAGGACATTGAGGTCACGCCGGATGAACTCCGGGCCG
CTGGCAGGAACTTCAAGCTGTTGTACGGCGAGTTATTGGGCGCAAGCTTT
CTAGACCAT
BO28392.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45186-RA | 1428 | CG45186-PA | 1..1425 | 17..1441 | 7125 | 100 | Plus |
| CG45186-RAD | 10422 | CG45186-PAD | 9052..10419 | 74..1441 | 6840 | 100 | Plus |
| CG45186-RAC | 9348 | CG45186-PAC | 7978..9345 | 74..1441 | 6840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:56:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45186-RA | 2084 | CG45186-RA | 111..1535 | 17..1441 | 7125 | 100 | Plus |
| CG45186-RAD | 11244 | CG45186-RD | 9328..10695 | 74..1441 | 6840 | 100 | Plus |
| CG45186-RAC | 10679 | CG45186-RC | 8763..10130 | 74..1441 | 6840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:56:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2463056..2464300 | 197..1441 | 6225 | 100 | Plus |
| 3L | 28110227 | 3L | 2461088..2461268 | 17..197 | 905 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 21:56:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2451 | 892..1036 | 147 | 60.1 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 647..723 | 746..669 | 117 | 62.8 | Minus |
BO28392.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-19 10:53:21 Download gff for
BO28392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42669-RA | 111..1535 | 17..1443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:46 Download gff for
BO28392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42669-RA | 111..1535 | 17..1443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:41 Download gff for
BO28392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45186-RA | 111..1535 | 17..1443 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:41 Download gff for
BO28392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2461088..2461268 | 17..197 | 100 | -> | Plus |
| 3L | 2463057..2464300 | 198..1443 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:46 Download gff for
BO28392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2461088..2461268 | 17..197 | 100 | -> | Plus |
| arm_3L | 2463057..2464300 | 198..1443 | 99 | | Plus |
BO28392.pep Sequence
Translation from 16 to 1459
> BO28392.pep
MPTTIKRHSTTIVIKSSISGTTNSRQSPPASSAEVSSSAADNSMHSDERS
TPNATIDAEFEPSSLSLAERLAFFSNLCESGGGGGSTSAGGRYRSRTSSY
SRSPPGDRTTPRSSTTASSVSMTPTPMDYSPIPHDKEPSSLTLESIIEPE
QEEVKEQVDQDEVKLRKKEPVQRESSQHNGFHVLTRSATEPPSSTSPLRI
SIRTVGKLVLPDTFRGDRNNNSSSRSGSNSWSNTCMVKLQSLEPVSLSVH
SRTIGKVKSPFIEKQQEKPHTEKLANGTSDSGSDSGKENCASNEQEHLQH
QQSQDEDRAPPRVSEMRRKISRLVQQQQPQPQPVNRRHTTEITSVTVGTR
SPSVDDRFAKYFGVKESCNSTTTVHKTQSLPPSQVEATNAHVKLPQITTV
VSKRRELLKRTRPLSMDHYSSGCTSPTAMPSPKRAHSPVGRRKAAISSIE
DIEVTPDELRAAGRNFKLLYGELLGASFLDH
BO28392.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45186-PA | 475 | CG45186-PA | 1..475 | 1..475 | 2424 | 100 | Plus |
| CG45186-PU | 1519 | CG45186-PU | 1063..1519 | 19..475 | 2334 | 99.8 | Plus |
| CG45186-PT | 1877 | CG45186-PT | 1421..1877 | 19..475 | 2334 | 99.8 | Plus |
| CG45186-PR | 1702 | CG45186-PR | 1246..1702 | 19..475 | 2334 | 99.8 | Plus |
| CG45186-PQ | 1877 | CG45186-PQ | 1421..1877 | 19..475 | 2334 | 99.8 | Plus |
