BO28393.complete Sequence
1363 bp assembled on 2012-04-24
GenBank Submission: KX799428
> BO28393.complete
GAAGTTATCAGTCGACATGGCCGGTAATGGAGAGGCGTCTTGGTGCTTCT
CACAGATTAAAGGCGCCCTAGACGATGATGTCACGGATGCAGACATCATA
TCCTGCGTGGAATTCAATCACGATGGCGAGCTGCTGGCCACTGGTGACAA
GGGCGGTCGCGTCGTCATCTTTCAGCGTGATCCTGCCTCAAAAGCCGCCA
ATCCGCGACGCGGCGAATACAATGTCTATTCGACATTCCAATCGCACGAG
CCCGAATTCGACTACCTCAAGTCCCTGGAGATTGAGGAGAAGATAAACAA
GATCCGGTGGCTGCAACAAAAGAATCCCGTGCACTTTCTGCTCTCGACCA
ACGACAAGACAGTCAAATTGTGGAAGGTCAGTGAGCGTGACAAGTCGTTC
GGCGGCTACAACACGAAGGAGGAGAACGGACTGATCCGGGATCCACAGAA
TGTAACGGCCCTCCGAGTGCCATCCGTGAAGCAGATACCACTGCTGGTGG
AGGCCTCCCCACGGCGCACCTTCGCCAATGCACACACCTATCACATCAAT
TCAATAAGCGTTAATTCGGATCAGGAGACCTTCTTGTCGGCCGACGACCT
GCGGATCAATCTGTGGCACTTGGAGGTGGTCAACCAGAGCTACAACATTG
TCGACATCAAGCCAACCAACATGGAGGAGCTAACAGAGGTGATCACCGCG
GCCGAATTCCATCCGACCGAGTGCAATGTGTTTGTCTACTCGAGCTCTAA
GGGCACAATACGATTATGTGATATGCGTTCGGCGGCGCTATGCGACCGGC
ACAGCAAACAGTTCGAGGAGCCCGAGAATCCAACGAATCGCAGCTTTTTC
AGCGAAATAATCAGCTCCATCAGCGATGTGAAGCTAAGCAACTCGGGTCG
CTACATGATCTCCAGGGATTACTTGAGCATCAAAGTGTGGGATCTGCATA
TGGAAACAAAGCCCATTGAGACCTATCCGGTTCATGAATACCTGCGCGCC
AAGCTGTGCTCGCTGTACGAAAATGACTGCATCTTCGACAAGTTCGAGTG
CTGTTGGAACGGCAAGGACAGCTCAATAATGACCGGAAGCTACAACAACT
TCTTCCGCGTCTTCGATCGCAACTCGAAAAAGGATGTGACGCTAGAGGCG
TCCAGGGACATCATCAAACCGAAAACGGTGCTTAAGCCACGGAAAGTTTG
CACTGGCGGCAAACGAAAGAAGGATGAGATCAGCGTGGACTGTCTAGATT
TCAACAAGAAGATCCTGCACACCGCCTGGCACCCCGAAGAAAATATCATC
GCCGTGGCTGCGACCAATAACCTCTTCATATTTCAGGATAAATTTGCAAG
CTTTCTAGACCAT
BO28393.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:44:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tws-RH | 1332 | CG6235-PH | 1..1329 | 17..1345 | 6615 | 99.8 | Plus |
| tws-RG | 1332 | CG6235-PG | 1..1329 | 17..1345 | 6615 | 99.8 | Plus |
| tws-RC | 1332 | CG6235-PC | 1..1329 | 17..1345 | 6615 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:44:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tws-RH | 2300 | CG6235-RH | 464..1794 | 15..1345 | 6625 | 99.8 | Plus |
| tws-RG | 2400 | CG6235-RG | 571..1901 | 15..1345 | 6625 | 99.8 | Plus |
| tws-RC | 2242 | CG6235-RC | 406..1736 | 15..1345 | 6625 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:44:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10128627..10129436 | 982..173 | 4035 | 99.9 | Minus |
| 3R | 32079331 | 3R | 10128150..10128516 | 1345..979 | 1820 | 99.7 | Minus |
| 3R | 32079331 | 3R | 10129495..10129647 | 175..23 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:44:13 has no hits.
BO28393.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:31 Download gff for
BO28393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RE | 490..1818 | 17..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:51 Download gff for
BO28393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RC | 408..1736 | 17..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:56:07 Download gff for
BO28393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RC | 408..1736 | 17..1347 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:56:07 Download gff for
BO28393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10128146..10128515 | 980..1347 | 99 | <- | Minus |
| 3R | 10128630..10129433 | 176..979 | 99 | <- | Minus |
| 3R | 10129495..10129650 | 17..175 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:51 Download gff for
BO28393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5953868..5954237 | 980..1347 | 99 | <- | Minus |
| arm_3R | 5954352..5955155 | 176..979 | 99 | <- | Minus |
| arm_3R | 5955217..5955372 | 17..175 | 97 | | Minus |
BO28393.pep Sequence
Translation from 16 to 1363
> BO28393.pep
MAGNGEASWCFSQIKGALDDDVTDADIISCVEFNHDGELLATGDKGGRVV
IFQRDPASKAANPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLQ
QKNPVHFLLSTNDKTVKLWKVSERDKSFGGYNTKEENGLIRDPQNVTALR
VPSVKQIPLLVEASPRRTFANAHTYHINSISVNSDQETFLSADDLRINLW
HLEVVNQSYNIVDIKPTNMEELTEVITAAEFHPTECNVFVYSSSKGTIRL
CDMRSAALCDRHSKQFEEPENPTNRSFFSEIISSISDVKLSNSGRYMISR
DYLSIKVWDLHMETKPIETYPVHEYLRAKLCSLYENDCIFDKFECCWNGK
DSSIMTGSYNNFFRVFDRNSKKDVTLEASRDIIKPKTVLKPRKVCTGGKR
KKDEISVDCLDFNKKILHTAWHPEENIIAVAATNNLFIFQDKFASFLDH
BO28393.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tws-PH | 443 | CG6235-PH | 1..443 | 1..443 | 2347 | 100 | Plus |
| tws-PG | 443 | CG6235-PG | 1..443 | 1..443 | 2347 | 100 | Plus |
| tws-PC | 443 | CG6235-PC | 1..443 | 1..443 | 2347 | 100 | Plus |
| tws-PE | 443 | CG6235-PE | 1..443 | 1..443 | 2347 | 100 | Plus |
| tws-PD | 443 | CG6235-PD | 1..443 | 1..443 | 2347 | 100 | Plus |
