BO28394.complete Sequence
1570 bp assembled on 2011-06-28
GenBank Submission: KX794194
> BO28394.complete
GAAGTTATCAGTCGACATGCCCTGCGTGCAATTGACGCACATTATGGCCG
CCCGCCAGATCGCGTCCACCCTGAAGACCTCTCTGGGTCCCAAGGGTCTG
GACAAGATCATGGTCAGTCCCGACGGCGACGTGACTGTGACCAACGATGG
CGCCACCATCATGAAGCTGATGGAGGTTGACCACGAGATTGCCAAGCTGA
TGGTGCAGCTGTCGCAGTCACAGGACGACGAGATCGGCGATGGAACCACC
GGCGTTGTCGTGCTGGCCGGAGCACTCTTGGAGCAGGCCGAGGGACTGAT
CGACAGGGGCATTCATCCCATTCGCATCGCCGATGGCTTTGAATTGGCCG
CCCAGTGCGCCATCAAGCAGCTGGACGCGATCGCCCAACCCTTCCCCGTG
GACCCGAAGAACAAGGAGCCACTTATCCAGATCGCCATGACCACGCTGGG
CAGCAAGATCGTGAACAAGTGCCATCGTCAGATGGCCGAAATGGCTGTGG
ATGCTGTGCTGAATGTGGCCGACATTGAGAAGAAGGACGTGAACTTCGAG
CTCATCAAGATCGAGACCAAGGTGGGCGGTCGCATGGAGGACTCGATGCT
GGTGAAGGGTGTCATCGTTGACAAGACCCTCAGCCATTCGCAGATGCCCA
AGGAGCTAAGGAACGTCAAGCTGGCCATTCTCACCTGCCCGTTTGAGCCC
CCGAAGCCAAAGACCAAGCATAAGCTCGATGTTACCTCCGCGGAAGACTA
CAGGGCGCTGCGCGAGTACGAGCAGGAGAAGTTCACCCAGATGGTCAAGC
AGGTGAAGGACGCCGGCGCCACCCTTGCCATCTGCCAGTGGGGCTTCGAT
GATGAGGCCAACCACCTGTTGCTTCAGCAGGAGCTGCCCGCCGTGCGCTG
GGTTGGCGGTCCGGAGATCGAGCTGATTGCCATCGCCACCGGTGGACGCA
TCGTGCCGCGTTTCGAAGAGCTCACGCCTGAGAAACTAGGTGTTGCGGGA
CTCGTTCGCGAAATGGCATTCGGAACATCCAAGGACAAGATGCTGGTCAT
CGAGGAGTGCAAAAACTCCAAGGCTGTGACCATCTTCTTGCGTGGAGGTA
ACGCCATGATCATTGCGGAGGCTAAGCGATCGATTCACGATGCCATCTGC
GTGGTGCGTTCGCTTGTGAAGGACTCGCGTATTGTTTACGGTGGTGGAGC
TGCCGAGATTAGCTGCTCGTTGGCTGTGGCCAAGGAGGCCGACCAACTGT
CCACGCTGGAGCAGTACGCCTTCCGCGCCTTCTCCGTGGCCCTGGAGAGC
ATTCCGCTGGCTCTGGCGGAGAACAGCGGCCTGCATCCCATCGAGACGTT
GTCGGAGCTGAAGGCCAGACAGGTGGCCGAGAAGAAGTCCAGCCTGGGTG
TCGACTGCATGCTGTCGGGTGATTCGGACATGAAGAGCCATAACGTGGTG
GAGTCGCTGCACTCGAAGAAGCAGCAGATTCTGCTCTCCACGCAGCTCGT
CAAGATGATACTCAAGATCGACGACGTGCGCTCCAAGAACGAAGGCGGCA
TGGCAAGCTTTCTAGACCAT
BO28394.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:26:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cct5-RB | 1539 | CG8439-PB | 1..1536 | 17..1552 | 7680 | 100 | Plus |
| Cct5-RA | 1629 | CG8439-PA | 108..1626 | 34..1552 | 7595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:26:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cct5-RB | 1754 | CG8439-RB | 16..1551 | 17..1552 | 7680 | 100 | Plus |
| Cct5-RA | 1948 | CG8439-RA | 227..1745 | 34..1552 | 7595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12175736..12176718 | 34..1016 | 4915 | 100 | Plus |
| 2R | 25286936 | 2R | 12176777..12177313 | 1016..1552 | 2685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:26:37 has no hits.
BO28394.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 14:45:25 Download gff for
BO28394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct5-RB | 16..1551 | 17..1554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:05 Download gff for
BO28394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct5-RB | 16..1551 | 17..1554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:14 Download gff for
BO28394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct5-RB | 16..1551 | 17..1554 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:14 Download gff for
BO28394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12175111..12175128 | 17..34 | 100 | -> | Plus |
| 2R | 12175737..12176718 | 35..1016 | 100 | -> | Plus |
| 2R | 12176778..12177313 | 1017..1554 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:05 Download gff for
BO28394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8062616..8062633 | 17..34 | 100 | -> | Plus |
| arm_2R | 8063242..8064223 | 35..1016 | 100 | -> | Plus |
| arm_2R | 8064283..8064818 | 1017..1554 | 99 | | Plus |
BO28394.pep Sequence
Translation from 16 to 1570
> BO28394.pep
MPCVQLTHIMAARQIASTLKTSLGPKGLDKIMVSPDGDVTVTNDGATIMK
LMEVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEGLIDRGIH
PIRIADGFELAAQCAIKQLDAIAQPFPVDPKNKEPLIQIAMTTLGSKIVN
KCHRQMAEMAVDAVLNVADIEKKDVNFELIKIETKVGGRMEDSMLVKGVI
VDKTLSHSQMPKELRNVKLAILTCPFEPPKPKTKHKLDVTSAEDYRALRE
YEQEKFTQMVKQVKDAGATLAICQWGFDDEANHLLLQQELPAVRWVGGPE
IELIAIATGGRIVPRFEELTPEKLGVAGLVREMAFGTSKDKMLVIEECKN
SKAVTIFLRGGNAMIIAEAKRSIHDAICVVRSLVKDSRIVYGGGAAEISC
SLAVAKEADQLSTLEQYAFRAFSVALESIPLALAENSGLHPIETLSELKA
RQVAEKKSSLGVDCMLSGDSDMKSHNVVESLHSKKQQILLSTQLVKMILK
IDDVRSKNEGGMASFLDH
BO28394.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:53:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cct5-PB | 512 | CG8439-PB | 1..512 | 1..512 | 2564 | 100 | Plus |
| Cct5-PA | 542 | CG8439-PA | 37..542 | 7..512 | 2530 | 100 | Plus |
| CG5525-PA | 533 | CG5525-PA | 26..528 | 4..504 | 823 | 37.6 | Plus |
| CG7033-PA | 535 | CG7033-PA | 24..520 | 5..504 | 710 | 35.2 | Plus |
| T-cp1-PA | 557 | CG5374-PA | 20..537 | 4..508 | 673 | 32.2 | Plus |
