BO28396.complete Sequence
2512 bp assembled on 2011-07-18
GenBank Submission: KX793951
> BO28396.complete
GAAGTTATCAGTCGACATGGATCATGATGGGGATACGAGGGACTTTATGC
GGGGATATCACAGCGAGCAGGATGAGAAAATGAAGCCGAAAGACTCGTTC
GATAAGCGTGAAGATCTGGCTACGGCGATCCTGAAGCGCAAGGACCGTCC
CAACCGACTGATTGTGGAAGAGGCGCAGAATGACGACAACTCTGTGGTGT
CGCTATCGCAGGCGAAGATGGATGAGCTGCAGCTCTTCCGTGGCGACACC
GTGATTCTGAAGGGCAAGCGCCGAAAGGAGACGGTGTGCATCGTGCTCTC
GGACGACACCTGTCCCGACGAGAAGATCCGCATGAACCGCGTGGTGCGCA
ACAACCTGTGCGTCCATCTTTCAGATGTGGTTTCCGTGCAGTCCTGCCCG
GACGTCAAGTACGGCAAACGGGTGCGCATCCTGCCCATCGACGAAAGCAC
CGAAGGCGTTACCGGCAACCTGTTCGAGATCTATCTGAAGCCGTACTTCC
TAGAGGCCTATCGGCCAATCCACATGGGCGACAACTTTATTGTGCGCGCC
GCCATGCGTCCTATTGAGTTCAAGGTGGTGCTGACCGACCCGGAGCCCTA
CTGCATCGTAGCTCCCGAGACTGTAATCTTCTGCGACGGTGATCCAATCA
AGCGCGAGGAGGAGGAGGAGTCCCTAAACGCCGTTGGCTACGATGATATC
GGTGGTTGCCGCAAGCAGCTGGCCCAGATCAAGGAGATGGTTGAGTTGCC
TTTGCGGCATCCATCGCTCTTCAAGGCCATTGGTGTGAAGCCACCGCGTG
GTATTCTTATGTACGGTCCCCCGGGTACCGGTAAGACCCTGATTGCCAGG
GCTGTGGCCAACGAGACCGGAGCCTTTTTCTTCCTGATTAACGGACCGGA
GATCATGTCCAAACTGGCCGGAGAGTCGGAATCGAATCTGCGTAAGGCCT
TCGAGGAAGCCGAGAAAAACTCGCCGGCTATCATCTTCATCGATGAGATC
GACGCTATTGCCCCCAAGCGTGACAAGACCCACGGTGAGGTGGAGCGTCG
CATTGTGTCGCAGCTTTTGACCCTGATGGATGGCATGAAGAAGAGCTCCC
ATCTGATCGTTATGGCTGCTACCAACAGGCCCAACTCCATTGACCCGGCC
CTGCGTCGCTTTGGACGTTTTGATCGTGAGATTGACATCGGCATTCCAGA
TGCCACTGGTCGGCTGGAGGTGCTGCGCATTCACACCAAGAACATGAAGC
TGCATGATGATGTTGACCTGGAGCAGATTGCTGCCGAATCCCACGGACAT
GTGGGCGCTGATCTGGCTTCACTCTGCTCTGAGGCTGCCCTTCAGCAAAT
CCGTGAGAAGATGGACCTCATCGATTTGGAAGACGATAAGATCGATGCCG
AGGTGCTGGCGTCGCTGGCCGTGACAATGGAGAACTTCCGCTACGCTATG
ACCAAGTCCAGTCCATCGGCGCTGCGTGAAACTGTTGTTGAGGTGCCCAA
CACCACCTGGACAGACATCGGCGGTCTGGAGAGCGTCAAGAAGGAATTGC
AGGAGCTGGTGCAATACCCAGTGGAGCATCCGGACAAGTTCTTGAAGTTT
GGCATGCAGCCCAGTCGCGGTGTCCTTTTCTACGGACCCCCTGGTTGCGG
TAAGACGCTGCTGGCCAAGGCCATTGCCAACGAGTGCCAGGCGAACTTCA
TCTCAGTCAAGGGTCCCGAGCTGCTGACCATGTGGTTCGGCGAGTCTGAG
GCCAACGTGCGCGACATCTTCGATAAGGCTCGCTCGGCGGCTCCTTGTGT
GCTCTTCTTTGACGAGCTGGACTCGATCGCCAAAGCCCGTGGCGGTAATG
TCGGCGATGCTGGCGGCGCCGCTGATCGTGTGATCAATCAGATCCTTACC
GAAATGGATGGCATGGGAGCCAAGAAGAATGTGTTCATCATCGGAGCCAC
CAATCGCCCGGACATTATCGATCCGGCCATCCTCCGTCCGGGCCGTCTGG
ATCAGTTGATCTATATTCCGCTGCCCGACGACAAATCGCGTGAGGCTATC
CTGAAGGCTAACTTGCGCAAGTCGCCGCTGGCCAAGGAAGTAGACCTTAC
CTACATCGCCAAGGTGACGCAGGGCTTCTCTGGCGCCGATCTGACCGAGA
TCTGCCAGCGGGCTTGCAAGCTGGCCATCCGACAGGCCATCGAGGCTGAA
ATTCGTCGCGAGAAGGAGCGCGCCGAAAATCAGAACTCCGCGATGGACAT
GGACGAGGACGATCCAGTGCCGGAGATTACCAGCGCCCACTTCGAGGAGG
CCATGAAGTTCGCTCGCCGTTCGGTGTCCGATAATGACATCAGGAAGTAC
GAGATGTTTGCCCAGACTTTGCAGCAGTCCCGTGGATTCGGACAGAACTT
CAGATTCCCCGGTCAAACCGGCAACACCTCAGGATCTGGTAACAACTTGC
CAGTTAACTCGCCCGGCGACAACGGCGACGATGATCTTTACAGTGCAAGC
TTTCTAGACCAT
BO28396.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TER94-RC | 2481 | CG2331-PC | 1..2478 | 17..2494 | 12255 | 99.6 | Plus |
| TER94-RE | 2478 | CG2331-PE | 1..2475 | 17..2494 | 12175 | 99.5 | Plus |
| TER94-RA | 2406 | CG2331-PA | 13..2403 | 104..2494 | 11805 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TER94-RC | 3058 | CG2331-RC | 96..2573 | 17..2494 | 12255 | 99.6 | Plus |
| TER94-RE | 3055 | CG2331-RE | 96..2570 | 17..2494 | 12175 | 99.5 | Plus |
| TER94-RA | 3016 | CG2331-RA | 141..2531 | 104..2494 | 11805 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:53:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9990657..9992696 | 209..2248 | 10080 | 99.6 | Plus |
| 2R | 25286936 | 2R | 9992763..9992917 | 2249..2403 | 760 | 99.4 | Plus |
| 2R | 25286936 | 2R | 9990470..9990574 | 108..212 | 525 | 100 | Plus |
| 2R | 25286936 | 2R | 9992981..9993074 | 2401..2494 | 470 | 100 | Plus |
| 2R | 25286936 | 2R | 9990298..9990389 | 17..108 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:53:52 has no hits.
BO28396.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-18 16:37:16 Download gff for
BO28396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RC | 1..2478 | 17..2496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:10 Download gff for
BO28396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RC | 96..2573 | 17..2496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:20 Download gff for
BO28396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RC | 96..2573 | 17..2496 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:20 Download gff for
BO28396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9990298..9990389 | 17..108 | 100 | -> | Plus |
| 2R | 9990471..9990573 | 109..211 | 100 | -> | Plus |
| 2R | 9990660..9992696 | 212..2248 | 99 | -> | Plus |
| 2R | 9992763..9992917 | 2249..2403 | 99 | -> | Plus |
| 2R | 9992984..9993074 | 2404..2496 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:10 Download gff for
BO28396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5877803..5877894 | 17..108 | 100 | -> | Plus |
| arm_2R | 5877976..5878078 | 109..211 | 100 | -> | Plus |
| arm_2R | 5878165..5880201 | 212..2248 | 99 | -> | Plus |
| arm_2R | 5880268..5880422 | 2249..2403 | 99 | -> | Plus |
| arm_2R | 5880489..5880579 | 2404..2496 | 97 | | Plus |
BO28396.pep Sequence
Translation from 16 to 2512
> BO28396.pep
MDHDGDTRDFMRGYHSEQDEKMKPKDSFDKREDLATAILKRKDRPNRLIV
EEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGKRRKETVCIVLSDDTCP
DEKIRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRILPIDESTEGVTG
NLFEIYLKPYFLEAYRPIHMGDNFIVRAAMRPIEFKVVLTDPEPYCIVAP
ETVIFCDGDPIKREEEEESLNAVGYDDIGGCRKQLAQIKEMVELPLRHPS
LFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL
AGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERRIVSQL
LTLMDGMKKSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL
EVLRIHTKNMKLHDDVDLEQIAAESHGHVGADLASLCSEAALQQIREKMD
LIDLEDDKIDAEVLASLAVTMENFRYAMTKSSPSALRETVVEVPNTTWTD
IGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLA
KAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCVLFFDE
LDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI
IDPAILRPGRLDQLIYIPLPDDKSREAILKANLRKSPLAKEVDLTYIAKV
TQGFSGADLTEICQRACKLAIRQAIEAEIRREKERAENQNSAMDMDEDDP
VPEITSAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGQNFRFPGQ
TGNTSGSGNNLPVNSPGDNGDDDLYSASFLDH
BO28396.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:00:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TER94-PC | 826 | CG2331-PC | 1..826 | 1..826 | 4254 | 100 | Plus |
| TER94-PE | 825 | CG2331-PE | 1..825 | 1..826 | 4237 | 99.9 | Plus |
| TER94-PA | 801 | CG2331-PA | 5..801 | 30..826 | 4083 | 99.9 | Plus |
| TER94-PD | 759 | CG2331-PD | 1..759 | 68..826 | 3907 | 100 | Plus |
| CG5776-PB | 799 | CG5776-PB | 255..766 | 209..728 | 974 | 37.3 | Plus |
