Clone BO28412 Report

Search the DGRC for BO28412

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:284
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG13989-RA
Protein status:BO28412.pep: Imported from assembly
Sequenced Size:439

Clone Sequence Records

BO28412.complete Sequence

439 bp assembled on 2011-09-14

GenBank Submission: KX796858

> BO28412.complete
GAAGTTATCAGTCGACATGTACCATTCTTCAGGCCCATGTCGTGCCCACT
TCAGGCGATCCAGTCAGCGTGATCGGTTGCCCAGGCTGAGTAGCTCGTCC
ACCATGGATGTGGCACCTCGCTTTCAGAGAATACGACGCGGGAGCACTTG
CGAGGCGGAGAGGCGAGTGGCCAAGGCGGCCCAGGACGCCAATGTGCCGC
CGGCCAAGCTCTATCTACGCTCCACCTCACGGGGATTGCGTCGTGTCCTC
GAGATCTATATGCCACGATTCCAGCCCGACGAGCACTTGGCCAGCGCCGA
GGAGGAGCAGCGGTCAGAGGACGAACTTGGCGAGTCAGCCAGGACACGGG
AGCCACAGGAAGCTCTGCCCATTGCCACCAACTGGGCGGTGGTGAAGTGG
CGGACGTCGGATGCGGTCGCCGCAAGCTTTCTAGACCAT

BO28412.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG13989-RA 408 CG13989-PA 1..405 17..421 2025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13989-RA 855 CG13989-RA 132..537 16..421 2030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:13:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6160531..6160936 16..421 2030 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:13:39 has no hits.

BO28412.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 11:59:14 Download gff for BO28412.complete
Subject Subject Range Query Range Percent Splice Strand
CG13989-RA 89..493 17..423 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:17 Download gff for BO28412.complete
Subject Subject Range Query Range Percent Splice Strand
CG13989-RA 133..537 17..423 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:11 Download gff for BO28412.complete
Subject Subject Range Query Range Percent Splice Strand
CG13989-RA 133..537 17..423 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:11 Download gff for BO28412.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6160532..6160936 17..423 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:17 Download gff for BO28412.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6160532..6160936 17..423 99   Plus

BO28412.pep Sequence

Translation from 16 to 439

> BO28412.pep
MYHSSGPCRAHFRRSSQRDRLPRLSSSSTMDVAPRFQRIRRGSTCEAERR
VAKAAQDANVPPAKLYLRSTSRGLRRVLEIYMPRFQPDEHLASAEEEQRS
EDELGESARTREPQEALPIATNWAVVKWRTSDAVAASFLDH

BO28412.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13989-PA 135 CG13989-PA 1..135 1..135 693 100 Plus