BO28422.complete Sequence
1087 bp assembled on 2011-06-27
GenBank Submission: KX794179
> BO28422.complete
GAAGTTATCAGTCGACATGTCTGTTCGCAACTCACGCCCCCAGTTATCGT
GGCCGGAGCGGGTAAGTCCGCAAAGGACTATTGACACTCCAACGGCATCC
GGAGAAATGTTGACTCGTCGTCAATCGGCACCAGCGTTGGTCGTGCCGCC
GGAGGAGACCACGCACGTTGTGGTGGTCAAGCGGCAATCCCCGGACGCAG
CCGCTGCCGGAGAACTGGTGCCGTCTAGGCGGAAGGACTCGGTGGCTGTG
CAGTCGGGAATTGTGGCCACTGGGCCATTGGACACAACACGCAGTGGTGC
AAGAGACGATTTTCTAATGGCTTTGCTCGAGTGCCCGGTGTGCTTTGGCT
ACATAATGCCGCCAATTATGCAGTGCCCGCGTGGCCACCTCATCTGCTCC
ACCTGCCGCTCAAAGTTGACCATTTGCCCCGTCTGCCGGGTGTTCATGAC
CAACATCCGCAGCCTGGCAATGGAGAAGGTGGCCTCCAAGCTGATCTTTC
CCTGCAAGCATTCGCATTTCGGCTGCAGAGCGCGGCTCTCTTACGCAGAG
AAGACCAAGCACGAGGAGGATTGCGAATGCCGTCCGTACTTCTGCCCGTA
TCCGGATGACAAGTGCTCCTGGCAGGGACCGTTGAGGGACGTATACCAGC
ACCTGATGAGCTCCCACGAGAACGTGATCACCATGGAGGGCAACGACATC
ATCTTTTTGGCCACCAATGTGAATCTGGAGGGTGCCCTCGACTGGACAAT
GGTGCAGTCCTGCCATGGGCGGCACTTCCTCCTCTCGCTGGAGAAGATCA
ATTTGGGAGAGGACTGTCAGCAGTACTTCACCGCCTGTCGGATGATCGGC
TCCATGAAGGATGCCGCCGAGTTCGTGTATAACATCTCCTTGGAGGCCTA
TAATCGCACTCTCCGCTGGCAATCCAAGCCAAGATCAATCCGTGAGAACT
TCTCCTCGTTCACCAACGCCGACTTCCTGGTGCTCAATAAGCACACCGTC
GAACTGTTCTCTGAGGACGGTAATCTTGCCCTGAACGTGGTCATTAGGAA
GGTGGAGGAGCGTACCAACGCAAGCTTTCTAGACCAT
BO28422.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sinah-RC | 1056 | CG13030-PC | 1..1053 | 17..1069 | 5265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sinah-RC | 1450 | CG13030-RC | 179..1231 | 17..1069 | 5265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16859258..16860310 | 17..1069 | 5265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:56:16 has no hits.
BO28422.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:25:17 Download gff for
BO28422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sinah-RC | 179..1231 | 17..1071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:08 Download gff for
BO28422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sinah-RC | 179..1231 | 17..1071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:09 Download gff for
BO28422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sinah-RC | 179..1231 | 17..1071 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:09 Download gff for
BO28422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16859258..16860310 | 17..1071 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:08 Download gff for
BO28422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16852358..16853410 | 17..1071 | 99 | | Plus |
BO28422.pep Sequence
Translation from 16 to 1087
> BO28422.pep
MSVRNSRPQLSWPERVSPQRTIDTPTASGEMLTRRQSAPALVVPPEETTH
VVVVKRQSPDAAAAGELVPSRRKDSVAVQSGIVATGPLDTTRSGARDDFL
MALLECPVCFGYIMPPIMQCPRGHLICSTCRSKLTICPVCRVFMTNIRSL
AMEKVASKLIFPCKHSHFGCRARLSYAEKTKHEEDCECRPYFCPYPDDKC
SWQGPLRDVYQHLMSSHENVITMEGNDIIFLATNVNLEGALDWTMVQSCH
GRHFLLSLEKINLGEDCQQYFTACRMIGSMKDAAEFVYNISLEAYNRTLR
WQSKPRSIRENFSSFTNADFLVLNKHTVELFSEDGNLALNVVIRKVEERT
NASFLDH
BO28422.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sinah-PC | 351 | CG13030-PC | 1..351 | 1..351 | 1868 | 100 | Plus |
sina-PC | 314 | CG9949-PC | 8..314 | 55..346 | 766 | 47.9 | Plus |
sina-PB | 314 | CG9949-PB | 8..314 | 55..346 | 766 | 47.9 | Plus |
sina-PA | 314 | CG9949-PA | 8..314 | 55..346 | 766 | 47.9 | Plus |
CG2681-PA | 626 | CG2681-PA | 162..332 | 53..238 | 220 | 30.3 | Plus |