Clone BO28422 Report

Search the DGRC for BO28422

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:284
Well:22
Vector:pDNR-Dual
Associated Gene/Transcriptsinah-RC
Protein status:BO28422.pep: Imported from assembly
Sequenced Size:1087

Clone Sequence Records

BO28422.complete Sequence

1087 bp assembled on 2011-06-27

GenBank Submission: KX794179

> BO28422.complete
GAAGTTATCAGTCGACATGTCTGTTCGCAACTCACGCCCCCAGTTATCGT
GGCCGGAGCGGGTAAGTCCGCAAAGGACTATTGACACTCCAACGGCATCC
GGAGAAATGTTGACTCGTCGTCAATCGGCACCAGCGTTGGTCGTGCCGCC
GGAGGAGACCACGCACGTTGTGGTGGTCAAGCGGCAATCCCCGGACGCAG
CCGCTGCCGGAGAACTGGTGCCGTCTAGGCGGAAGGACTCGGTGGCTGTG
CAGTCGGGAATTGTGGCCACTGGGCCATTGGACACAACACGCAGTGGTGC
AAGAGACGATTTTCTAATGGCTTTGCTCGAGTGCCCGGTGTGCTTTGGCT
ACATAATGCCGCCAATTATGCAGTGCCCGCGTGGCCACCTCATCTGCTCC
ACCTGCCGCTCAAAGTTGACCATTTGCCCCGTCTGCCGGGTGTTCATGAC
CAACATCCGCAGCCTGGCAATGGAGAAGGTGGCCTCCAAGCTGATCTTTC
CCTGCAAGCATTCGCATTTCGGCTGCAGAGCGCGGCTCTCTTACGCAGAG
AAGACCAAGCACGAGGAGGATTGCGAATGCCGTCCGTACTTCTGCCCGTA
TCCGGATGACAAGTGCTCCTGGCAGGGACCGTTGAGGGACGTATACCAGC
ACCTGATGAGCTCCCACGAGAACGTGATCACCATGGAGGGCAACGACATC
ATCTTTTTGGCCACCAATGTGAATCTGGAGGGTGCCCTCGACTGGACAAT
GGTGCAGTCCTGCCATGGGCGGCACTTCCTCCTCTCGCTGGAGAAGATCA
ATTTGGGAGAGGACTGTCAGCAGTACTTCACCGCCTGTCGGATGATCGGC
TCCATGAAGGATGCCGCCGAGTTCGTGTATAACATCTCCTTGGAGGCCTA
TAATCGCACTCTCCGCTGGCAATCCAAGCCAAGATCAATCCGTGAGAACT
TCTCCTCGTTCACCAACGCCGACTTCCTGGTGCTCAATAAGCACACCGTC
GAACTGTTCTCTGAGGACGGTAATCTTGCCCTGAACGTGGTCATTAGGAA
GGTGGAGGAGCGTACCAACGCAAGCTTTCTAGACCAT

BO28422.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
sinah-RC 1056 CG13030-PC 1..1053 17..1069 5265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
sinah-RC 1450 CG13030-RC 179..1231 17..1069 5265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16859258..16860310 17..1069 5265 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:56:16 has no hits.

BO28422.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:25:17 Download gff for BO28422.complete
Subject Subject Range Query Range Percent Splice Strand
sinah-RC 179..1231 17..1071 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:08 Download gff for BO28422.complete
Subject Subject Range Query Range Percent Splice Strand
sinah-RC 179..1231 17..1071 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:09 Download gff for BO28422.complete
Subject Subject Range Query Range Percent Splice Strand
sinah-RC 179..1231 17..1071 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:09 Download gff for BO28422.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16859258..16860310 17..1071 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:08 Download gff for BO28422.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16852358..16853410 17..1071 99   Plus

BO28422.pep Sequence

Translation from 16 to 1087

> BO28422.pep
MSVRNSRPQLSWPERVSPQRTIDTPTASGEMLTRRQSAPALVVPPEETTH
VVVVKRQSPDAAAAGELVPSRRKDSVAVQSGIVATGPLDTTRSGARDDFL
MALLECPVCFGYIMPPIMQCPRGHLICSTCRSKLTICPVCRVFMTNIRSL
AMEKVASKLIFPCKHSHFGCRARLSYAEKTKHEEDCECRPYFCPYPDDKC
SWQGPLRDVYQHLMSSHENVITMEGNDIIFLATNVNLEGALDWTMVQSCH
GRHFLLSLEKINLGEDCQQYFTACRMIGSMKDAAEFVYNISLEAYNRTLR
WQSKPRSIRENFSSFTNADFLVLNKHTVELFSEDGNLALNVVIRKVEERT
NASFLDH

BO28422.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
sinah-PC 351 CG13030-PC 1..351 1..351 1868 100 Plus
sina-PC 314 CG9949-PC 8..314 55..346 766 47.9 Plus
sina-PB 314 CG9949-PB 8..314 55..346 766 47.9 Plus
sina-PA 314 CG9949-PA 8..314 55..346 766 47.9 Plus
CG2681-PA 626 CG2681-PA 162..332 53..238 220 30.3 Plus