BO28427.complete Sequence
1171 bp assembled on 2011-06-29
GenBank Submission: KX797223
> BO28427.complete
GAAGTTATCAGTCGACATGAGTTTGACGGAGATGATGCGGGGCAAATCGA
TGCCAGCGGAAAAGAAGAATGACATCAAACTGGCCCAGCATGAATTTGCA
ACCGTGAGAATAGTGCAAATCGGATGTGTTTTAAATGTCCTGGCCGAGGC
CATCGAACGGGTTAAGATCTCGCTAATCATGCCGAAACTGCTGGAACACC
CCGCGCACATGGCTAAGATTCTTAATGGAACCAAGTACGAAAAGGCAGTT
CACCTGGTGGAATCGTTTGTTCGTCGAAGGGAGTTCATTCTGCGGGAGAA
ACGTCCGCCCCTGATGGATCACGGCATTATCCAGATCATCGATTTCTTCC
AGCGGAACAGCAGGATCTACCTTCTGTTTCCCAGCTACTACAACCACATG
AGCGACAACGAGAAGAAGCTGCTGAACGCCTTCGAGATGCTCTATGATCT
GGCCAAGGACCGCTTGTACAGGACGTCCACCGACGCCATCGCCCAGGAGC
GCCAGCTGCATGCCATGTACAAGCAGAACGAGGTGGTCAAGGAGCAGGTG
GAAGAGCTGCGCAAGAAGATCCTGGATCAGAAGGCGGCCATCAGGAAGAG
CTTGGCTGATAAGGAGGCCTACCTGCAAAACTACGAGGACCTCCTCATGA
AGAAGAAGAGGGAGAAGAACGAGCGAATCCAAAAGGAAATCGATCGGTGC
ACTCGTCTGGTAAAGGCCAATAAAAAATTAAGTTTAGAGCGACAAGCTGA
TTTGGAAGAACAGCTGCAAAAAACGCGAAACAACTATAACTTAACCACAA
AAAACTATTTAAAACAGGAAAAGGTGTTTCGAGAGGAAAAAAACAAGCTG
ATTTTACAACTACAAGCCATTATCAAGAAATACGATCACAGCATTGGCGA
AAAGATGATCGAGAACATGGAGCTCGCCGAAGAACACAAAAAGGCTAAGA
AGGCCCTCGACGAATACATGATTGGGTTCCTGAAGGTTGAGCGGGTCTAC
AAGCAGATCGTCGTAAAGCGAGAGGAAGAGGAGGCCAGGCACCGCCAGCA
TCGTGTCCTGTTATTCGCCATGAACCGCGCAGCCATCAAGATCCAGAAAT
ACTGGAGAAAGTGGAAGAAACACATGCGCAAGAAGAACAGGCGAAATAAG
AACGCAAGCTTTCTAGACCAT
BO28427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1137-RA | 1140 | CG1137-PA | 1..1137 | 17..1153 | 5685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1137-RA | 1363 | CG1137-RA | 127..1263 | 17..1153 | 5685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:29:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6559307..6559905 | 690..92 | 2995 | 100 | Minus |
| 3R | 32079331 | 3R | 6558718..6559030 | 1153..841 | 1565 | 100 | Minus |
| 3R | 32079331 | 3R | 6559098..6559247 | 840..691 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 6560150..6560225 | 92..17 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:29:53 has no hits.
BO28427.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-29 12:07:03 Download gff for
BO28427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1137-RA | 127..1263 | 17..1155 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:26 Download gff for
BO28427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1137-RA | 127..1263 | 17..1155 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:34 Download gff for
BO28427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1137-RA | 127..1263 | 17..1155 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:34 Download gff for
BO28427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6558715..6559030 | 841..1155 | 99 | <- | Minus |
| 3R | 6559098..6559247 | 691..840 | 100 | <- | Minus |
| 3R | 6559307..6559904 | 93..690 | 100 | <- | Minus |
| 3R | 6560150..6560225 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:26 Download gff for
BO28427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2384437..2384752 | 841..1155 | 99 | <- | Minus |
| arm_3R | 2384820..2384969 | 691..840 | 100 | <- | Minus |
| arm_3R | 2385029..2385626 | 93..690 | 100 | <- | Minus |
| arm_3R | 2385872..2385947 | 17..92 | 100 | | Minus |
BO28427.pep Sequence
Translation from 16 to 1171
> BO28427.pep
MSLTEMMRGKSMPAEKKNDIKLAQHEFATVRIVQIGCVLNVLAEAIERVK
ISLIMPKLLEHPAHMAKILNGTKYEKAVHLVESFVRRREFILREKRPPLM
DHGIIQIIDFFQRNSRIYLLFPSYYNHMSDNEKKLLNAFEMLYDLAKDRL
YRTSTDAIAQERQLHAMYKQNEVVKEQVEELRKKILDQKAAIRKSLADKE
AYLQNYEDLLMKKKREKNERIQKEIDRCTRLVKANKKLSLERQADLEEQL
QKTRNNYNLTTKNYLKQEKVFREEKNKLILQLQAIIKKYDHSIGEKMIEN
MELAEEHKKAKKALDEYMIGFLKVERVYKQIVVKREEEEARHRQHRVLLF
AMNRAAIKIQKYWRKWKKHMRKKNRRNKNASFLDH
BO28427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:53:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1137-PA | 379 | CG1137-PA | 1..379 | 1..379 | 1921 | 100 | Plus |
| CG13168-PC | 360 | CG13168-PC | 7..353 | 31..378 | 723 | 42.2 | Plus |
| CG13168-PB | 341 | CG13168-PB | 4..334 | 47..378 | 715 | 42.8 | Plus |
| CG13168-PD | 317 | CG13168-PD | 7..250 | 31..275 | 397 | 35.5 | Plus |
