BO28429.complete Sequence
1225 bp assembled on 2011-06-27
GenBank Submission: KX793792
> BO28429.complete
GAAGTTATCAGTCGACATGGCCCACAGGGAGTACAATCGTCGTGATGGCC
AGGCAGAGGGATTGGGACTAGGTGGTGGCGATGCAGACAACAGTGTACGT
ATGCGACACCCCACCCCACCACCGCTGGCGGTGCAGCATGCAAGATCTGG
GGCGATGGTTGTGGAACTGGCAGTGGACCCTTCCCGTGCGATGAGGTCGA
CCAACCAGCAGCAGCCAATTGATCGGGATCAGTTGAGGATCAGCACGGAG
GAAAGCTGTCAGGGATCCGAGTTGGTTGTCGCATCATCACATCTATCCAA
AAAAATTCAAGAACATCGCCGACCAAATCAGCTGGTGCGCTTTTGCCTAC
GATTGGGCTACAACACCCTGCTGTATCCGTACGAAATGGCCAAGGTTCTT
ATCCAACTGGGACATGAACCGCTTCAGGCGAAGCCCTTTGTTATGCGACT
GATTCAACGGCGGCCACGCCTCTTTTTGCCCAGTGTCCATCGGTATGTGC
AGCACATTCAGCATATAGATGGCTATACGGGAATGTATCGTGGGTTGACC
GCTCGCCTGGCCGCCAGCATAGTAGACTATTTGCTTGGCGATCTTCTGCT
GGCTACCTTGCACTTTGCACCCTATAAGAGAGGCCCCAAGGAGGGACTGA
GCCTCAAGGAGTTCTGGTGGAATCTGACAAGGAACAGCTTGCGCATTACC
ACCGTAGTGGTTATAACACATCCCTTTTACGTGGTTATGGTGCGCCAGAT
AGCCCAGTTTGTGGGTGGTGAACACGTTTATGAGGGTCTCGTTGGCAGCC
TGATGACTCTTGCGCAACAGGAGGGATGTGCAGGACTTTTTGCGGGCATG
GTGCCACGCCTTTTGGGCGAGTGGAGCGTCCTTTTCATTACGAGCGCTCT
GAGTCACCTTTGCCGTCGTCTCCTGCCAATGAGCGAACTCCAGCATCAGT
ATAACACCGCGGTAATTCAGATGATGGCAAGCCTAGTGGCCTATCCACTG
GAGGTGACATCCACCTGCATGGCCGGAACCGGAGCACCATTAACCGCATG
TGAGCCACCGAGCATGCCGCTCTACAATCACTGGGTCGACTGCCTTACGG
ATCTCTATGCCCGCGGTGGCCAAAACCGTGGTGCCATTCTCTTCTGGCGC
ACGGTGCCCAAGATCCAGTTGCTGCGCAGCAAGGATAATTACACTGTAAG
ATCGATTGCAAGCTTTCTAGACCAT
BO28429.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10920-RA | 1194 | CG10920-PA | 1..1191 | 17..1207 | 5880 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10920-RA | 1764 | CG10920-RA | 127..1317 | 17..1207 | 5880 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7852928..7854118 | 1207..17 | 5880 | 99.6 | Minus |
Blast to na_te.dros performed 2014-11-26 15:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R2-element | 3607 | R2-element DMRER2DM 3607bp Derived from X51967 (g8432) (Rel. 24, Last updated, Version 1). | 1675..1750 | 727..803 | 121 | 65.4 | Plus |
BO28429.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:25:18 Download gff for
BO28429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10920-RA | 96..1286 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:13 Download gff for
BO28429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10920-RA | 96..1286 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:16 Download gff for
BO28429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10920-RA | 127..1317 | 17..1209 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:16 Download gff for
BO28429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7852926..7854118 | 17..1209 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:13 Download gff for
BO28429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7746959..7748151 | 17..1209 | 99 | | Minus |
BO28429.pep Sequence
Translation from 16 to 1225
> BO28429.pep
MAHREYNRRDGQAEGLGLGGGDADNSVRMRHPTPPPLAVQHARSGAMVVE
LAVDPSRAMRSTNQQQPIDRDQLRISTEESCQGSELVVASSHLSKKIQEH
RRPNQLVRFCLRLGYNTLLYPYEMAKVLIQLGHEPLQAKPFVMRLIQRRP
RLFLPSVHRYVQHIQHIDGYTGMYRGLTARLAASIVDYLLGDLLLATLHF
APYKRGPKEGLSLKEFWWNLTRNSLRITTVVVITHPFYVVMVRQIAQFVG
GEHVYEGLVGSLMTLAQQEGCAGLFAGMVPRLLGEWSVLFITSALSHLCR
RLLPMSELQHQYNTAVIQMMASLVAYPLEVTSTCMAGTGAPLTACEPPSM
PLYNHWVDCLTDLYARGGQNRGAILFWRTVPKIQLLRSKDNYTVRSIASF
LDH
BO28429.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10920-PA | 397 | CG10920-PA | 1..397 | 1..397 | 2078 | 100 | Plus |
| Mtch-PG | 316 | CG6851-PG | 11..294 | 99..379 | 534 | 39.9 | Plus |
| Mtch-PF | 316 | CG6851-PF | 11..294 | 99..379 | 534 | 39.9 | Plus |
| Mtch-PE | 316 | CG6851-PE | 11..294 | 99..379 | 534 | 39.9 | Plus |
| Mtch-PC | 316 | CG6851-PC | 11..294 | 99..379 | 534 | 39.9 | Plus |
