Clone BO28433 Report

Search the DGRC for BO28433

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:284
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG13455-RA
Protein status:BO28433.pep: Imported from assembly
Sequenced Size:1165

Clone Sequence Records

BO28433.complete Sequence

1165 bp assembled on 2011-06-27

GenBank Submission: KX794439

> BO28433.complete
GAAGTTATCAGTCGACATGAACCTGAGCACCCTTCTGAGGAGTGTGAGCA
ACGGTCTTGGCTTCGGAACCGTCACGAGAAAGAGCGACTTGGGTCGTCCC
CTGGCCCCTCTTAGCTCCACGTCGAGCTCGTCTTCAAATAATTCAAATTT
GGATCCCGTTTCCAGTCTCTTACTTCCCTCGGAGGACGAAGAGGACGAGC
CCATATCACTGGGCGAAAATCATCTGGCCTCAACTGATGCCAGCCTGAAC
AAAAACCAGGAGCCCAATCCCTACCAGCAGACCGTCCAACAGATACTGCG
ACTAGTGAATGAACTGGAGCACACAATTCACGAGGATCGGCAGCAGGAGT
TCAAGCTCCGAATGGCCCTCGATCGGCAGACAGAACGGGTTCAGGAACTG
GTGTTTTCACTGGACACGGAAAGGAAGCGAAACGAGCGACTGGTGCAGTT
GCTCCGGGGAATCGATAGCTCCAGTTCGAGTGAGAGCGATCCGGAGAAGA
GGGGCCCCAGTGGCTCCCATGTGAACTCCATTGGTGAGCTGTACGACTCC
ATCAGCCCACTGCTGATGCAACAGCGTTACGTTGAGCTCTCCGTGTCCCA
TCGCCAAAGTCGTCGGCAGTTAGCCAAGAGGGAAAAGGCTCTCAAGGTAC
TTCAAAGCAAAACGGAGCAGCTGCACTCCAAATACGACGAGCTATTCGAT
GAGTACCGGAGTGAACAGCGCCGTTTCGAGATGCTGTGCACTCGCTATAT
TCAAATGCAGTTGAAGAAGAAACAGCAAATCTTCAATCTAAAGAATACAC
TCGGTCAGGCTAGCGAGTGTATATTCCATGCCCAGGTGGTCATCGATGAG
TGTTGTCATGCGGAGAAGTCGCCCATTTCTCCGGAGAATCTGGAAATCTT
TCGCAGGAATCTGGAGTGCTTTATGGATGCGCTCAGGAACTGCTGCTGCC
TGCGAAAAGTCCACGAGCTTCAGCAGCAGCAGCGCAAAAAGGAGGAAATG
GAAAAGTGTCAGAACCAGAATCCAGTCGATGACTTGCTCACACCGAAGGC
CAGGGAACGCTCAAGTCAAGAGCAGAGTAGTGACACCTACATTCAGAATC
TCTCCAATCGACATCCTCGTATTCGACGTTACAGGCATTCAGCTCGTGCA
AGCTTTCTAGACCAT

BO28433.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13455-RA 1134 CG13455-PA 1..1131 17..1147 5610 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13455-RA 1414 CG13455-RA 142..1272 17..1147 5610 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15497342..15497913 576..1147 2830 99.7 Plus
3L 28110227 3L 15496715..15497281 17..583 2790 99.5 Plus
Blast to na_te.dros performed on 2014-11-26 15:56:44 has no hits.

BO28433.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:25:19 Download gff for BO28433.complete
Subject Subject Range Query Range Percent Splice Strand
CG13455-RA 174..1304 17..1149 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:17 Download gff for BO28433.complete
Subject Subject Range Query Range Percent Splice Strand
CG13455-RA 142..1272 17..1149 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:27 Download gff for BO28433.complete
Subject Subject Range Query Range Percent Splice Strand
CG13455-RA 142..1272 17..1149 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:27 Download gff for BO28433.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15496715..15497274 17..576 99 -> Plus
3L 15497343..15497913 577..1149 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:17 Download gff for BO28433.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15489815..15490374 17..576 99 -> Plus
arm_3L 15490443..15491013 577..1149 99   Plus

BO28433.pep Sequence

Translation from 16 to 1165

> BO28433.pep
MNLSTLLRSVSNGLGFGTVTRKSDLGRPLAPLSSTSSSSSNNSNLDPVSS
LLLPSEDEEDEPISLGENHLASTDASLNKNQEPNPYQQTVQQILRLVNEL
EHTIHEDRQQEFKLRMALDRQTERVQELVFSLDTERKRNERLVQLLRGID
SSSSSESDPEKRGPSGSHVNSIGELYDSISPLLMQQRYVELSVSHRQSRR
QLAKREKALKVLQSKTEQLHSKYDELFDEYRSEQRRFEMLCTRYIQMQLK
KKQQIFNLKNTLGQASECIFHAQVVIDECCHAEKSPISPENLEIFRRNLE
CFMDALRNCCCLRKVHELQQQQRKKEEMEKCQNQNPVDDLLTPKARERSS
QEQSSDTYIQNLSNRHPRIRRYRHSARASFLDH

BO28433.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13455-PA 377 CG13455-PA 1..377 1..377 1926 100 Plus