Clone BO28437 Report

Search the DGRC for BO28437

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:284
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG4701-RA
Protein status:BO28437.pep: Imported from assembly
Sequenced Size:1186

Clone Sequence Records

BO28437.complete Sequence

1186 bp assembled on 2011-06-27

GenBank Submission: KX798856

> BO28437.complete
GAAGTTATCAGTCGACATGGACTCGCAGGAGGGTACTCAGTGCCAGATCC
TGGCCATCGTCATTCGGGTGTGTGTGTTTAGCGCGTTAACGTACTACACT
GCCAAATGGATGATCAATGCGCTGGATCCCAATAATAAGATCCGGGGTAA
GGCGAAATATGTTGCGGAAGAGCAGCTGCGCAAGCTGAACTCCTCGGCGA
TTGGCGCGGCAAAGAAGTTTCGAGCCCGTGACTTTAATGAGCACGAGATG
ATGATTGCTTCGCATCTGGTGACGCCTGAGGACATTGATATCAGTTGGTC
GGATATTGCCGGACTGGATGGGACTATTCAGGAGCTTAGGGAGACGGTGG
TTCTCCCAGTGCGTCATCGTAAGCTCTTTAGCCGATCGAAACTGTGGCGA
GCGCCCAAGGGAGTCCTGCTGCATGGACCGCCTGGTTGTGGCAAGACCCT
GATCGCCAAGGCCATTGCCAAGGATGCTGGGATGCGATTCATCAATCTGG
ACGTGGGTGTGCTAACGGACAAGTGGTACGGCGAAAGCCAGAAGCTGGCC
ACAGCCGTTTTCACGCTGGCCAAAAAACTTCAGCCCTGCATCATCTTCAT
AGACGAAATTGAATCTTTTCTCAGGATGCGCGGTAGCAATGATCACGAGG
CAACCGCCATGATTAAGACTCAGTTTATGTTGCAGTGGGATGGGTTAATG
AGCAATACCAACATTTGTGTCCTCGTTTTGGGGGCCACAAACCGGCCGCA
AGACCTCGATAAAGCCATCCTGCGCCGTATGCCCGCACAATTTCACATTG
GAGTGCCGCGAGACTGCCAGCGACGCGAAATCCTTCAGTTGATCCTCCAG
ACAGAGCAACTGAGTCCTTCGGTTAATCTGAAGGAGCTGGCCCGACTGAC
GATTGGATTTTCAGGATCCGATTTGCGGGAATTGTGTCGCCACGCATCCA
TGTACCGTATGCGCCAGTTTATGCGCGAAAAGCTGAACACCGGCGAGGAA
ATTGGAAAAGACAAGATTGAATGGGACTTCGAGGTAAAGGATCAGGCCTT
GCAGGAGTGGGAGCACTTGGAAATTCAAATGGAAGACCTTCTCAAGTCGC
TGTCCGTCATGAAGGCGTCGAAACATCAGGCGCAGGGCACTTTTCTCGAA
AAGGATCTGGAGTTGGACGCAAGCTTTCTAGACCAT

BO28437.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4701-RA 1155 CG4701-PA 1..1152 17..1168 5760 100 Plus
nmd-RC 1110 CG5395-PC 281..791 291..801 335 71 Plus
nmd-RB 870 CG5395-PB 41..551 291..801 335 71 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4701-RA 1318 CG4701-RA 100..1251 17..1168 5760 100 Plus
nmd-RC 1719 CG5395-RC 392..902 291..801 335 71 Plus
nmd-RB 1172 CG5395-RB 264..774 291..801 335 71 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14766007..14767158 17..1168 5760 100 Plus
2L 23513712 2L 10302990..10303500 801..291 335 71 Minus
Blast to na_te.dros performed on 2014-11-26 15:56:59 has no hits.

BO28437.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:25:19 Download gff for BO28437.complete
Subject Subject Range Query Range Percent Splice Strand
CG4701-RA 100..1251 17..1170 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:23 Download gff for BO28437.complete
Subject Subject Range Query Range Percent Splice Strand
CG4701-RA 100..1251 17..1170 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:34 Download gff for BO28437.complete
Subject Subject Range Query Range Percent Splice Strand
CG4701-RA 100..1251 17..1170 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:34 Download gff for BO28437.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14766007..14767158 17..1170 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:23 Download gff for BO28437.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14766007..14767158 17..1170 99   Plus

BO28437.pep Sequence

Translation from 16 to 1186

> BO28437.pep
MDSQEGTQCQILAIVIRVCVFSALTYYTAKWMINALDPNNKIRGKAKYVA
EEQLRKLNSSAIGAAKKFRARDFNEHEMMIASHLVTPEDIDISWSDIAGL
DGTIQELRETVVLPVRHRKLFSRSKLWRAPKGVLLHGPPGCGKTLIAKAI
AKDAGMRFINLDVGVLTDKWYGESQKLATAVFTLAKKLQPCIIFIDEIES
FLRMRGSNDHEATAMIKTQFMLQWDGLMSNTNICVLVLGATNRPQDLDKA
ILRRMPAQFHIGVPRDCQRREILQLILQTEQLSPSVNLKELARLTIGFSG
SDLRELCRHASMYRMRQFMREKLNTGEEIGKDKIEWDFEVKDQALQEWEH
LEIQMEDLLKSLSVMKASKHQAQGTFLEKDLELDASFLDH

BO28437.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4701-PA 384 CG4701-PA 1..384 1..384 1978 100 Plus
nmd-PC 369 CG5395-PC 15..369 10..384 1145 58.9 Plus
nmd-PA 369 CG5395-PA 15..369 10..384 1145 58.9 Plus
nmd-PB 289 CG5395-PB 1..289 79..384 996 62.7 Plus
CG3326-PB 523 CG3326-PB 247..481 92..327 484 41.8 Plus