BO28441.complete Sequence
1816 bp assembled on 2011-07-01
GenBank Submission: KX796315
> BO28441.complete
GAAGTTATCAGTCGACATGAAGGACTCGAGTCAATCGGCGCCGGCAGGCC
TTTTGGTGGCAAATCTGAAGTCTTGGGAAACGTTCGACTGGCCGACGGAG
CAGCAGCGTTGGATCTACCGCAGTTGGGGTCAGTACTTTGCGCGGATGCG
GAAGAACACCTTTGCCCAGAAGTACTTCGACAAATGCATCACAGAGAATG
AGAGCACGGATCACAAGGCTCTTTATCTGCGCAGCAAATTCAAGAGATCG
GTGGCCCTGACGCAGGACGCATTGGAGGATAGTTTGAGGGCCATGGAGGT
AAGGCAGGCGTGGGACGCAAATGTGTCCATGGAGCTCGGAGATGCGCTCT
ACGATTTGAATCGGTTTGAGGAGAACAAGAGCCTGCTGCACGACAATGTC
CGTCGGCATGCGGGCACCGCTCTAAAGAGCTTCGAGAATCGCCTCGTGGT
AGTCGATGAGAATCTCAAGGATTGCACGGGCTTCAGCCTGGCCAACTTCT
TCATGGAGCATTCCGCGCAGCTGCCCGGCTTCTATGCCCATCAGCAGGAG
GAGCTTCGAAGGGCCGACAGGCGGCCGCTGTGGAAAATCCTCAAGGAGCG
AAAGGAGTGTGATGTCCAGAGCAGGATCGATCGCAAGGAGGTGATGCTCT
CCCCACTGGAAAGAGAGCGCAGGCGTCGCAAGACCAAGATATTTTATCAG
AACTATTTGGGTCGCAGCTGGACCGATTTTTTCTTTCTGAAAACACTTCG
CCGGCATCCCAACTGTCTTCTAGACAATCATTTCGGCTCCTCGGCGGACC
GCACCAAGTATCTTGAGTATGCGTTCCAGCGCCTTAAGACCTTCACACGG
ATGCTCCAGGCAAGGAGACCCATGTACAAGGAGTACTTCCATCGGAATCC
CCAGATAGAGGCTCGCATGCGGGATGCGAACTTGTTCCGGATCCAGTACC
AAACCAGGCGAAACATGGTGAGCATCCTGCGGACCATTAAGGTGCTGCGG
GGGCGGAATGATATCAAGCGCCTGCGCAAGTTTGTGGAGGAAGTGATGGG
CAGCTACGTGGTCATCAAGACGAATCGACTGATGCCCTGGAAGGCGGAGT
TCATGAACGAGGTGTACAACAATCTGGCCCTCAGTTTGTGCGAGGGATAC
CGCCTGCCGCCCACACGGGTCACGCCCTACGACAAGAGCGCCATGTGCCA
GCTGCTCAACATACCGGTGGCCAAGCCGCTGGAGCACACGGAGCTCATCT
TCGGGGATCGATCCACCTACTCCTATGCCGGCGCCGACAAACAGAGCACC
GATCGATTGGCAGACCAAAACCAAATCGAGTATCTGGAGAAACGACTTCT
CTTCGCCCGCCTGCCGATCGAAAGGAGCTACTTGCTCCATGAGCTGGCCG
ATCGGCATATGCAGAAGAACCACTTTGTGCAGAGCCTGTCCTACGCCCAG
AAGGCCATCGAGGAGGCCAGGGTATGCAATAGCCTGATCTGGGAGTTTCT
TAGCACCATGCTGATGGCCAAGTCACACGCGGTGCTCCACAAGTACGAGC
GCCAAACGGAGGTGCTCAACTCCGCCTACGAACTGGCCGCCCAGCTCAAG
TCGCCCCAACTGTGCACCTTCATCGAACTGTGCCGCATGCTCAACAAGGA
CTACATCACGTTGCGCAAGATGTCCCAACTGGTGACCACCAAACGGCTGC
GCACCAAAATCTCCAACAGGTCCAGTTTCCTCAGCTCACCCAACTGTTCG
CCCAACTTCTCGGAATTCAAAAAGGAAGAGTATGGTCATTTGGCCGCCGC
AAGCTTTCTAGACCAT
BO28441.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:44:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| r-cup-RA | 1785 | CG10998-PA | 1..1782 | 17..1798 | 8835 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:44:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| r-cup-RA | 2140 | CG10998-RA | 99..1880 | 17..1798 | 8835 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:44:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21024789..21025790 | 1018..17 | 4965 | 99.7 | Minus |
| X | 23542271 | X | 21023650..21024130 | 1798..1318 | 2375 | 99.6 | Minus |
| X | 23542271 | X | 21024400..21024700 | 1317..1017 | 1505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:44:54 has no hits.
BO28441.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-01 14:59:15 Download gff for
BO28441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| r-cup-RA | 99..1880 | 17..1800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:44 Download gff for
BO28441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| r-cup-RA | 99..1880 | 17..1800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:29 Download gff for
BO28441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| r-cup-RA | 99..1880 | 17..1800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:29 Download gff for
BO28441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21023648..21024130 | 1318..1800 | 99 | <- | Minus |
| X | 21024400..21024698 | 1019..1317 | 100 | <- | Minus |
| X | 21024789..21025790 | 17..1018 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:44 Download gff for
BO28441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20894675..20895157 | 1318..1800 | 99 | <- | Minus |
| arm_X | 20895427..20895725 | 1019..1317 | 100 | <- | Minus |
| arm_X | 20895816..20896817 | 17..1018 | 99 | | Minus |
BO28441.pep Sequence
Translation from 16 to 1816
> BO28441.pep
MKDSSQSAPAGLLVANLKSWETFDWPTEQQRWIYRSWGQYFARMRKNTFA
QKYFDKCITENESTDHKALYLRSKFKRSVALTQDALEDSLRAMEVRQAWD
ANVSMELGDALYDLNRFEENKSLLHDNVRRHAGTALKSFENRLVVVDENL
KDCTGFSLANFFMEHSAQLPGFYAHQQEELRRADRRPLWKILKERKECDV
QSRIDRKEVMLSPLERERRRRKTKIFYQNYLGRSWTDFFFLKTLRRHPNC
LLDNHFGSSADRTKYLEYAFQRLKTFTRMLQARRPMYKEYFHRNPQIEAR
MRDANLFRIQYQTRRNMVSILRTIKVLRGRNDIKRLRKFVEEVMGSYVVI
KTNRLMPWKAEFMNEVYNNLALSLCEGYRLPPTRVTPYDKSAMCQLLNIP
VAKPLEHTELIFGDRSTYSYAGADKQSTDRLADQNQIEYLEKRLLFARLP
IERSYLLHELADRHMQKNHFVQSLSYAQKAIEEARVCNSLIWEFLSTMLM
AKSHAVLHKYERQTEVLNSAYELAAQLKSPQLCTFIELCRMLNKDYITLR
KMSQLVTTKRLRTKISNRSSFLSSPNCSPNFSEFKKEEYGHLAAASFLDH
BO28441.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| r-cup-PA | 594 | CG10998-PA | 1..594 | 1..594 | 3102 | 100 | Plus |
| CG7634-PA | 579 | CG7634-PA | 24..563 | 20..560 | 1025 | 40.1 | Plus |
| CG15128-PA | 580 | CG15128-PA | 8..558 | 9..561 | 959 | 38.9 | Plus |
| wa-cup-PB | 580 | CG10113-PB | 13..549 | 8..552 | 842 | 36.1 | Plus |
| p-cup-PA | 538 | CG12993-PA | 44..529 | 91..574 | 623 | 32.4 | Plus |
