BO28445.complete Sequence
3148 bp assembled on 2011-08-04
> BO28445.complete
GAAGTTATCAGTCGACATGCCCGTTTCGATGGCCGTATGCGAAACGGCGA
ATGTCGTCAACGCAGCGCTGCGCGAATCCCTTGGCGGCAACTCCTCCGCC
GGCTCGTCGACTGACCAGGCCAAGAGCGGCGAGGACACCAACGGCAGCCT
GCAAAATCACATCGTGGCCAATGCCAAACGCATCCTGATGGCCAAAATCG
AATACGAGGAGGTGCCCAACTACCACGAATCGGTGCTGGAGAACCTCAAG
TCCAAATATATTGTCATCAAGCCGGGAAATCCAGGCGCCATCAATGGCTT
TAGTGGCAAAAACAACACAGGCAAACTTGTGGGCGCAAATGGACATGACA
ATAACGGCGCCCGCAAGCAAGCGGAGCACCCGAACAATCAGTCGCACCAC
ATCAACCACCACAATCATCAGCATCCGACAAGCAATCCCAATGAGCTGCC
CAAGCCAAAGAGGGTCCTCTATCCGCGGGAGAACATACGCATTGGCTGGA
AGCAGTCGGAGCGCAAATGGCAGGTGGGCACGGGCATGATCAATGTGGGC
AACACCTGCTACCTCAACTCAACGCTTCAGGCGCTCCTGCACATACCCGC
CCTGGCCAATTGGCTCGTTTCGGAGCAGGCGCATCTGGCTGACTGCAATG
TGGCCGAACCTGGCAGCGGTTGCATCATTTGCGCCATGACCAAAACACTT
TTGGCCACCCAAAGCAATCAGTCGGCCGTCAGGCCCTTCCTCATCTACTC
GAAGCTAAAGCAGATCTGCAAACACATGGTCGTTGGTCGCCAAGAGGATG
CGCACGAGTTCCTGCGCTTCCTGGTCGAGGCCATGGAGCGGGCGTATTTG
ATGCGGTTTCGTAACTACAAAGAGCTGGATCAGTTGGTTAAGGAGACCAC
GCCGCTGGGACAGATCTTTGGCGGCTATCTGCGCAGCGAGGTGCGCTGTC
TGAGCTGCAACCATGTGTCCATTACGTTTCAGCACTTCCAGGATCTGTTG
CTCGACATCCGCAAGGCAGACTCCTTGGAGGATGCTTTCGAGGGGCACTT
TTCTCGCGAACGGCTAGAGGATATGGGCTACAAGTGCGAGGGATGCAAGA
AGAAGGTATCTGCCACAAAGCAATTCTCTTTGGAGCGTGCCCCAATCACG
CTTTGTATACAGCTGAAGCGATTCTCCATGATCGGCAACAAACTGACCAA
GCAGATCTCCTTCAAGTCACGCATAGATTTGAGCAAATACGCAGCCCGTT
CACAAGCGGCTCAGGCTCAACCGCTCACCTATCGCCTGGTGTCGATGGTC
ACTCACTTGGGAGCATCCCAGCACTGCGGTCACTACACGGCCATTGGCTC
CACGGATACGGGCAGCTTTTACAACTTCGACGACAGCTACGTGCGGCCAA
TCGCAATGCACAGTGTGTGCAACACAAATGCCTATATAATGTTTTTCGAA
CTGGACCTCTCACAGGCTGCCAGTCCGGCGGCCAACAGGCCCAATGGAGT
GCGTTTGACCAACGGACACAGCACAACGCCAGTGCCGGCGGCGACTGTGT
CTTCGCCTTCACCAACGCGTTTCATTGGTCCTCAACTGCCGGCGGGTGGA
GCAAACGGTTACACTAATGGCAATGCCCAGAAAACCGCCATCCAGTTCAA
GCAACAAAACCAGCAAAGTCCACAGAACGGACTCCAGCTGGGTACCGGAA
AGTTTCAGGACACTGCGAAGCCTCCACTGGTTGGCGCTCACGCTAAAGGC
GAAGCTACTTCAGCTCCCACTGCAAATGGTAACAAAAGTTCCTCCCCAAG
CAGCAACAGCAGCAGCAACCACAAATCAATAAACCAGCAACAATATCTGC
CAATTTCTTCGGATGATGAAGACATCGAGGATGAGATGAAGCCCAGACCA
ACGACAGCCCAGCTACCGAGCATGCCCAATATGACGGAGAATCATACGGA
GCCTAAGGCAAAGTCTCCTGTAAAGATTCAAGTAAAGACTCCCGTCAAAA
CGCCACTGAAAAGTCTTGTGCCCTACGAATCCGCATCTGAGGAGGAGGAG
GCGCCTCTACCGAATCCCCGCAAGCGTCCAAGTGGGGAGGATTCTAGCGA
GTCGGACCAAGAGTCTGGCCAGACCAATGGTCACAGTAAGACCAATGGCA
GCCACACCAACGGCTCAGCCTCGTCATCGGTTCACGTTAACAACAGCAAA
CAAAAGACTGATGCCATAGACGAGATATTCAAGAGCCTAAAAAAGTCCGC
AGACAGTGATGAGGACGACGATGAGGAGGAGCCCAGCATTCAGCTAACGA
ATGGCTGGCACCCACAGAAGCAATCACAGTCTCAAAGCAAAGCACCACCA
TCGCCAAAGACGCCACCCTCGCCAGCGGTCATCAAATCGAAAACGGGTAT
CTGGAAAGTTACGCGTAACGATGAGGTCGATGCCATCGAAGATGATGTTG
ACGTCGTGGTGGTGGAGGGATCGCCGGTGAAAATTCCGACGCCGAACAAG
AACCATCGCAATCCCTTCTCGAGTAGCAAGCCCTCCACGGACTCGCCCGC
AACGCCAGGCGCCAAGCGCCAAAAGTTGCTCAACGGCAGTGCGCTCAAGT
CGCACCAGCAGCCAAGGGTGGGCAATGGCTACCAGAGCAATGCCACCTCG
AATGGAAGCACCATCAATGAGCTGCTGAAGCAATCGTATCGTGGATACGG
CTCCCCCGTGCTCAGTTGGAATGGCAAGCCCGCGGAGCTCGAAAAGGAGC
TACTGGTGGATGCGCGTGAGCAGCGGCAGCGGGACATCGACGACGACGAA
GAGAACGAGATGGATCGTGGACGTCAGCGGAAGGTGAAGTCCGGTTCGGC
TAAGGGAAACAATGCTAGCAACAGCACGCCCGGGTACAATCCATTCCAGG
AGTACGAGGGCCAGAAGCGCTGGAACAAGAACGGCGGAGGTGGAGGATTT
CCGCGATTCTACAATCAGAACTATCGCCAGAACTTCCAGCAGCGCAACAA
GTTCAAGTTCAACCGCTTCGGAGGACCAGGAAGCGCCAAGTTCCAGCAGC
AGCGAGCCCTGCAACGACATCTGTCCGCCGGCGGTGGCTTCAGTCGGCGA
CAACCGTCGGCGCAGCAGCAGCAGCAAACCGCAAGCTTACTAGACCAT
BO28445.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scny-RD | 3117 | CG5505-PD | 1..3114 | 17..3130 | 15345 | 99.5 | Plus |
| scny-RC | 2847 | CG5505-PC | 61..2844 | 347..3130 | 13710 | 99.5 | Plus |
| scny-RB | 2907 | CG5505-PB | 121..2904 | 347..3130 | 13710 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scny-RD | 4417 | CG5505-RD | 597..3715 | 12..3130 | 15355 | 99.5 | Plus |
| scny-RC | 3637 | CG5505-RC | 152..2935 | 347..3130 | 13710 | 99.5 | Plus |
| scny-RB | 3512 | CG5505-RB | 453..3236 | 347..3130 | 13710 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5772431..5774076 | 1104..2749 | 8095 | 99.5 | Plus |
| 3L | 28110227 | 3L | 5771617..5772378 | 347..1108 | 3765 | 99.6 | Plus |
| 3L | 28110227 | 3L | 5775187..5775569 | 2748..3130 | 1885 | 99.5 | Plus |
| 3L | 28110227 | 3L | 5769598..5769933 | 12..347 | 1650 | 99.4 | Plus |
Blast to na_te.dros performed 2014-11-27 00:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2415 | 1740..1850 | 153 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6851 | 1751..1850 | 146 | 65.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1057..1147 | 1764..1852 | 143 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6889 | 1775..1918 | 137 | 62 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1050..1153 | 1717..1824 | 135 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6789 | 1779..1842 | 128 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1508..1619 | 1741..1848 | 127 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2830 | 1781..1842 | 125 | 70.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2401..2451 | 1799..1847 | 124 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5634..5698 | 1783..1847 | 118 | 64.6 | Plus |
BO28445.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-04 15:53:49 Download gff for
BO28445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scny-RD | 602..3715 | 17..3132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:01 Download gff for
BO28445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scny-RD | 481..3594 | 17..3132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:08 Download gff for
BO28445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scny-RD | 602..3715 | 17..3132 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:08 Download gff for
BO28445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5769603..5769933 | 17..347 | 99 | -> | Plus |
| 3L | 5771618..5772375 | 348..1105 | 99 | -> | Plus |
| 3L | 5772433..5774076 | 1106..2749 | 99 | -> | Plus |
| 3L | 5775189..5775569 | 2750..3132 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:01 Download gff for
BO28445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5762703..5763033 | 17..347 | 99 | -> | Plus |
| arm_3L | 5764718..5765475 | 348..1105 | 99 | -> | Plus |
| arm_3L | 5765533..5767176 | 1106..2749 | 99 | -> | Plus |
| arm_3L | 5768289..5768669 | 2750..3132 | 98 | | Plus |
BO28445.pep Sequence
Translation from 16 to 3148
> BO28445.pep
MPVSMAVCETANVVNAALRESLGGNSSAGSSTDQAKSGEDTNGSLQNHIV
ANAKRILMAKIEYEEVPNYHESVLENLKSKYIVIKPGNPGAINGFSGKNN
TGKLVGANGHDNNGARKQAEHPNNQSHHINHHNHQHPTSNPNELPKPKRV
LYPRENIRIGWKQSERKWQVGTGMINVGNTCYLNSTLQALLHIPALANWL
VSEQAHLADCNVAEPGSGCIICAMTKTLLATQSNQSAVRPFLIYSKLKQI
CKHMVVGRQEDAHEFLRFLVEAMERAYLMRFRNYKELDQLVKETTPLGQI
FGGYLRSEVRCLSCNHVSITFQHFQDLLLDIRKADSLEDAFEGHFSRERL
EDMGYKCEGCKKKVSATKQFSLERAPITLCIQLKRFSMIGNKLTKQISFK
SRIDLSKYAARSQAAQAQPLTYRLVSMVTHLGASQHCGHYTAIGSTDTGS
FYNFDDSYVRPIAMHSVCNTNAYIMFFELDLSQAASPAANRPNGVRLTNG
HSTTPVPAATVSSPSPTRFIGPQLPAGGANGYTNGNAQKTAIQFKQQNQQ
SPQNGLQLGTGKFQDTAKPPLVGAHAKGEATSAPTANGNKSSSPSSNSSS
NHKSINQQQYLPISSDDEDIEDEMKPRPTTAQLPSMPNMTENHTEPKAKS
PVKIQVKTPVKTPLKSLVPYESASEEEEAPLPNPRKRPSGEDSSESDQES
GQTNGHSKTNGSHTNGSASSSVHVNNSKQKTDAIDEIFKSLKKSADSDED
DDEEEPSIQLTNGWHPQKQSQSQSKAPPSPKTPPSPAVIKSKTGIWKVTR
NDEVDAIEDDVDVVVVEGSPVKIPTPNKNHRNPFSSSKPSTDSPATPGAK
RQKLLNGSALKSHQQPRVGNGYQSNATSNGSTINELLKQSYRGYGSPVLS
WNGKPAELEKELLVDAREQRQRDIDDDEENEMDRGRQRKVKSGSAKGNNA
SNSTPGYNPFQEYEGQKRWNKNGGGGGFPRFYNQNYRQNFQQRNKFKFNR
FGGPGSAKFQQQRALQRHLSAGGGFSRRQPSAQQQQQTASLLDH
BO28445.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:12:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scny-PD | 1038 | CG5505-PD | 1..1038 | 1..1038 | 5455 | 100 | Plus |
| scny-PC | 948 | CG5505-PC | 21..948 | 111..1038 | 4894 | 100 | Plus |
| scny-PB | 968 | CG5505-PB | 41..968 | 111..1038 | 4894 | 100 | Plus |
| scny-PH | 976 | CG5505-PH | 1..911 | 1..911 | 4772 | 100 | Plus |
| scny-PG | 976 | CG5505-PG | 1..911 | 1..911 | 4772 | 100 | Plus |
