BO28446.complete Sequence
1255 bp assembled on 2011-06-29
GenBank Submission: KX797139
> BO28446.complete
GAAGTTATCAGTCGACATGTTTCGAATCTCTGGCCTTCTGAGTTCACTCG
TAGTCCTTACTTTTGTTCTGGAAATCAGTTGCCTGGAGAATGGCACCCTG
GCCAAGCTGAAAAAGTTTGTGAACTGTGAGTCTAAGGCTTACAAGTCCAG
CAATGCGATCTACAAGGATTACTGGGTGCTGGAGAACTATGTAATGGCTG
ATCACGGCGATATTCCGTGCTATTCGAATGTGACCTACACCACCCATGCG
GACTATACGTATCTGGATAATGTGGTGCCGCTCCTGGAACGCTGGCGATC
GCCCCTCAGCCTGGCCATATATGCGCCTGGCACGGACTTCGAGCCCACTA
TACACAGCATTTTGTACCTGCTGCAGTGCCATCCTGGCCACGACCTGGTT
CGCCAGCTGTGCAGCATTCATTTGTACTTCGATGTGGAGCACTTGCCCCA
GGTGGTTCTGCCACCCGAAACGACTCTAAGGGAGCCAGCCAACTGTAGTG
GACCACCGCCATATGAGAATGTCGTTAAAGGGAACATGTACAGGTCTCGA
AACACACTGGATTATCCCGTCAATATGGGACGCAACGTTGCACGCCGGGC
TTCGCTGACGCACTACGTCCTGGCCTCGGACATCGAGCTCTATCCCACGC
CCGGATTGGTGCCCGACTATATGCATTTCCTTGGCCGCCAAGTGATTGGA
ATTCCAGGACAGCAGCCTACTTCGCCGTTGGTCCATGTACTGCGGATTTT
CGAGGTAATGGCCAATGTATCTGTACCGAACACCAAGCCAGAGTTGCAAG
AGATGTTGAAGTCGGGCGAAGCTGTGCCATTTCACATGGACATCTGTGAG
GCGTGCCATAGGGGACCCAACCTGGAGGAGTGGATAAATGCGAGCGTTGT
GTCCAAGGAACTGAATGTCTTCAATGTTGGCCACCGCTCGGAAAATAACA
ACAATTGGGAGCCAATATTTTTGGGCACCGTCGAGGATCCTCCATACGAT
GAGCGATTAACGTGGGAGGGTCAACGGGACAAGATGACCCAGGCGTATGC
CATGTGCGTTCTGGACTACGAGTTCCATATCCTGGACAACGCCTTCCTGG
TCCATAAGCCCGGCATCAAACAGCCAGGCAATCGTAAGGAGATCTTCCCT
CAAGCCCGCCGAACCAATGGGCTTATCGATAAAAAGATCTCCAGGGAGAT
GCGGATGATGTACGGTTCTCGGAATGGTTGTGTTATTGCAAGCTTTCTAG
ACCAT
BO28446.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15483-RA | 1224 | CG15483-PA | 1..1221 | 17..1237 | 5985 | 99.3 | Plus |
| CG9171-RG | 1635 | CG9171-PG | 1408..1514 | 1013..1119 | 250 | 82.2 | Plus |
| CG9171-RF | 1635 | CG9171-PF | 1408..1514 | 1013..1119 | 250 | 82.2 | Plus |
| CG9171-RG | 1635 | CG9171-PG | 579..756 | 172..349 | 200 | 74.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15483-RA | 1382 | CG15483-RA | 49..1269 | 17..1237 | 5985 | 99.3 | Plus |
| CG9171-RG | 3950 | CG9171-RG | 1999..2105 | 1013..1119 | 250 | 82.2 | Plus |
| CG9171-RF | 3736 | CG9171-RF | 1785..1891 | 1013..1119 | 250 | 82.2 | Plus |
| CG9171-RG | 3950 | CG9171-RG | 1170..1347 | 172..349 | 200 | 74.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12761116..12761792 | 693..17 | 3340 | 99.6 | Minus |
| 2L | 23513712 | 2L | 12760459..12761004 | 1237..692 | 2655 | 99.1 | Minus |
| 2L | 23513712 | 2L | 5770385..5770562 | 349..172 | 200 | 74.2 | Minus |
| 2L | 23513712 | 2L | 5769437..5769501 | 1119..1055 | 190 | 86.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:41:25 has no hits.
BO28446.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-29 16:21:13 Download gff for
BO28446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15483-RA | 55..1269 | 23..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:13 Download gff for
BO28446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15483-RA | 55..1269 | 23..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:10 Download gff for
BO28446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15483-RA | 55..1269 | 23..1239 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:10 Download gff for
BO28446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12760457..12761004 | 692..1239 | 98 | <- | Minus |
| 2L | 12761118..12761786 | 23..691 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:13 Download gff for
BO28446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12760457..12761004 | 692..1239 | 98 | <- | Minus |
| arm_2L | 12761118..12761786 | 23..691 | 99 | | Minus |
BO28446.pep Sequence
Translation from 16 to 1255
> BO28446.pep
MFRISGLLSSLVVLTFVLEISCLENGTLAKLKKFVNCESKAYKSSNAIYK
DYWVLENYVMADHGDIPCYSNVTYTTHADYTYLDNVVPLLERWRSPLSLA
IYAPGTDFEPTIHSILYLLQCHPGHDLVRQLCSIHLYFDVEHLPQVVLPP
ETTLREPANCSGPPPYENVVKGNMYRSRNTLDYPVNMGRNVARRASLTHY
VLASDIELYPTPGLVPDYMHFLGRQVIGIPGQQPTSPLVHVLRIFEVMAN
VSVPNTKPELQEMLKSGEAVPFHMDICEACHRGPNLEEWINASVVSKELN
VFNVGHRSENNNNWEPIFLGTVEDPPYDERLTWEGQRDKMTQAYAMCVLD
YEFHILDNAFLVHKPGIKQPGNRKEIFPQARRTNGLIDKKISREMRMMYG
SRNGCVIASFLDH
BO28446.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15483-PA | 407 | CG15483-PA | 1..407 | 1..407 | 2192 | 100 | Plus |
| CG9171-PG | 544 | CG9171-PG | 171..544 | 30..407 | 1046 | 50.8 | Plus |
| CG9171-PF | 544 | CG9171-PF | 171..544 | 30..407 | 1046 | 50.8 | Plus |
| CG9171-PE | 544 | CG9171-PE | 171..544 | 30..407 | 1046 | 50.8 | Plus |
| CG9171-PD | 544 | CG9171-PD | 171..544 | 30..407 | 1046 | 50.8 | Plus |
