BO28477.complete Sequence
1648 bp assembled on 2011-07-01
GenBank Submission: KX794336
> BO28477.complete
GAAGTTATCAGTCGACATGCTCCTCAGCTCGCCGCTGAGTAAAAACCCAG
TGGTGCAGCGCAGCCTGGACTTGCGATTGCAGGGCGCCCAAGCGCGGCAT
TACCTCAAGTGGTGCTCCATAAATGTGGTGCTGCTGTCGCTACTCCTCTT
CGACCTCTGGCAGGCATGTCGGTCCGCCTACAGGACCTACTGGTTCCTGG
CGGAGTGCACCATTACGACCCTGATTGGCCTAAGTGCACTCGCCTGCTTC
GGCAAGTATTTGTGGTTATGGTTTGGTGGTGACCAAGTTACGGGTAGCGA
TATCCAAAAGTGGCTGCTTGATGGCAAGGCAGAGAACTCTTTTCGTACAG
TTTGCTCCCGAGCCGTGATGAAACCACGCAGCTACGAACCGGATAGCGAT
ATAGAGGACGACATACCCATCATCAACTGGCACTCCTCCTTCGAGGACTC
CTGCTGGGGCTCGCAATCCATGCGCCGCAGCCCCAGTCCCACAAGGACGC
CGCAGCAGACGAAACAAAACACCTCTTACAACTCCTCGATGGTTCGAAAC
AACTCGCTGAATGCCAGCAATCTGAGCAACGAGTCTACCTATATGTCCCC
GTATGCGGAGGTGCGACGCGATGACTTCATGACCGATACACGAAAGTTGA
CCAGTCTAATGAAGCAGGCGGATCGGGAGCGCAGCATGATGGACAGCTCG
GATACACCCAATGTGCAGAGCATGGGATCGGCCAACTCCTTCTGGAATTA
CTGCAACAATGCGGCCTATATGCTCAAGACCACCATCTATCAACTATCGC
CACCTCCGGCTGTTTCTACGGAAAATGCTCCCACCTCGATTGAGGAGTTT
GGCGGTATTCAGTTTAGGGACAGCAATTCGGAGGTCATCAAGCGCATATC
CACGGACAAACTGTCGCAATATGTGGCCAACCTAAGATTTTGGATTTCTA
CGACCATACTTCAGCGTTTGGTCAAAGAGATCAATTATGTGGACGATGTT
TTCCGCCAGCGAGCTCTGATTGACATTAAAATTGGATCTGTGAGTGTAGA
GAGATTACGCAAAACAGCCGAGAACCAGCAGTTCGTGCAGACGTGTGCGC
CCATGTTGCCCATGCTCTTACCTTTCCTGGACACCTTCAGCAACCAGGAA
TACCTGGTGCAGCGCATCAAGGAGCTTGCGCAGGGCTCTTGCATAGCTGA
CTACCGCTGGTACTCGGGCAAAACACACAACGGTCAGCAGCGGGACGAGC
ATTTGCCCACCGATGCAGCTATAATATTCCATTTATTTTGCGTGTACTTG
GATAGCCAGTTGATGCCGTTGCCGCAGGGCGGCGGACGACCCTTTCACTC
CCGCTACGTGTTAATTCGCGACGAGAAGAGCTCGACCAAGGACGTGGTGA
ACGCAGTTCACAACAAGGCCCACTGCGCCATTTTAAGTACCGGCAACCCA
CTTAACCCTAAATTTAACTTTATCAGCGACAAAGAACTACACAACTGCGT
CTACGATAGGAATAACCTGTTCTACGTTATCATACAGTTCCTAATTTATA
TGCGACAGCACCAGGACTCTGCTCTGGAGTGCGTAAATCTTGGCAAGAGT
GGTATCAACATCATGTGCGTCATCGAAGACGCAAGCTTTCTAGACCAT
BO28477.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:42:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6479-RB | 1617 | CG6479-PB | 1..1614 | 17..1630 | 8040 | 99.9 | Plus |
| CG6479-RA | 1629 | CG6479-PA | 23..1626 | 27..1630 | 7990 | 99.9 | Plus |
| CG6479-RC | 1611 | CG6479-PC | 23..1608 | 27..1630 | 7685 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6479-RB | 1791 | CG6479-RB | 26..1639 | 17..1630 | 8040 | 99.9 | Plus |
| CG6479-RA | 1861 | CG6479-RA | 106..1709 | 27..1630 | 7990 | 99.9 | Plus |
| CG6479-RC | 1843 | CG6479-RC | 106..1691 | 27..1630 | 7685 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17338129..17338738 | 940..331 | 3035 | 99.8 | Minus |
| 3L | 28110227 | 3L | 17337324..17337683 | 1630..1271 | 1785 | 99.7 | Minus |
| 3L | 28110227 | 3L | 17337743..17338072 | 1270..941 | 1650 | 100 | Minus |
| 3L | 28110227 | 3L | 17338796..17339111 | 332..17 | 1580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:42:46 has no hits.
BO28477.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-01 14:18:51 Download gff for
BO28477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6479-RB | 26..1639 | 17..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:47 Download gff for
BO28477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6479-RB | 26..1639 | 17..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:40 Download gff for
BO28477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6479-RB | 26..1639 | 17..1632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:40 Download gff for
BO28477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17337321..17337683 | 1271..1632 | 99 | <- | Minus |
| 3L | 17337743..17338072 | 941..1270 | 100 | <- | Minus |
| 3L | 17338129..17338736 | 333..940 | 99 | <- | Minus |
| 3L | 17338796..17339111 | 17..332 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:47 Download gff for
BO28477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17330421..17330783 | 1271..1632 | 99 | <- | Minus |
| arm_3L | 17330843..17331172 | 941..1270 | 100 | <- | Minus |
| arm_3L | 17331229..17331836 | 333..940 | 99 | <- | Minus |
| arm_3L | 17331896..17332211 | 17..332 | 100 | | Minus |
BO28477.pep Sequence
Translation from 16 to 1648
> BO28477.pep
MLLSSPLSKNPVVQRSLDLRLQGAQARHYLKWCSINVVLLSLLLFDLWQA
CRSAYRTYWFLAECTITTLIGLSALACFGKYLWLWFGGDQVTGSDIQKWL
LDGKAENSFRTVCSRAVMKPRSYEPDSDIEDDIPIINWHSSFEDSCWGSQ
SMRRSPSPTRTPQQTKQNTSYNSSMVRNNSLNASNLSNESTYMSPYAEVR
RDDFMTDTRKLTSLMKQADRERSMMDSSDTPNVQSMGSANSFWNYCNNAA
YMLKTTIYQLSPPPAVSTENAPTSIEEFGGIQFRDSNSEVIKRISTDKLS
QYVANLRFWISTTILQRLVKEINYVDDVFRQRALIDIKIGSVSVERLRKT
AENQQFVQTCAPMLPMLLPFLDTFSNQEYLVQRIKELAQGSCIADYRWYS
GKTHNGQQRDEHLPTDAAIIFHLFCVYLDSQLMPLPQGGGRPFHSRYVLI
RDEKSSTKDVVNAVHNKAHCAILSTGNPLNPKFNFISDKELHNCVYDRNN
LFYVIIQFLIYMRQHQDSALECVNLGKSGINIMCVIEDASFLDH
BO28477.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6479-PB | 538 | CG6479-PB | 1..538 | 1..538 | 2840 | 100 | Plus |
| CG6479-PA | 542 | CG6479-PA | 9..542 | 5..538 | 2823 | 100 | Plus |
| CG6479-PC | 536 | CG6479-PC | 9..536 | 5..538 | 2775 | 98.9 | Plus |
